Hibiscus syriacus (Rose-of-Sharon): 120187919
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Entry
120187919 CDS
T09559
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120187919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120187919
03012 Translation factors [BR:
hsyr03012
]
120187919
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120187919
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120187919
Translation factors [BR:
hsyr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120187919
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
HA2_C
R3H
Ank_2
OB_NTP_bind
HA2_N
nSTAND3
Ank
Ank_5
AAA_19
Ank_3
ResIII
Ank_4
ATPase
AAA_22
ABC_tran
TsaE
AAA_11
Rad17
NACHT
Myosin_head
Motif
Other DBs
NCBI-GeneID:
120187919
NCBI-ProteinID:
XP_039047443
LinkDB
All DBs
Position
Unknown
AA seq
1128 aa
AA seq
DB search
MGKNKTPLDEASVFRLTKILKKFNKGEDKAYNFEPNLSRKQRAFVHKECLKMGLISKNKG
SGNQRHVSVRKIKVKGGDMPGKNLTDVAFSKRASLVLQDLFSSYPPDDEELEEKEIRKYS
GKTAKIRRKKDDIFSKPMMSAVEIAEKVKELASKREKHPKLRQINEERSKLPIAGFGDAI
TSAVESNQVILISGETGCGKTTQVPQLLLDYMWGKGEACKILCTQPRRISATSVSERIAY
ERGESIGDNVGYKIRLESKGGRHSSIVFCTNGMLLRVLVSNSRSKREDISDMTHIIVDET
HERDSFCDFMLAIMRDILPSYPHLRLVLMSATLDSERFSQYFGGCPIIRVPGFTYPVKSF
YLEDVLSILKFADANHLISANATAQDQDQELTEEDPEFTEEELELTEEDKIALDEAISLA
WSSDEFDPLLDLVSVEGGSKVHNYQHSLTGLTPLMLFAAKGRVEEVCMLLSFGVDCDLIS
KDGKSALDWAVQENQQEAVNMIKKHIESSQANDGQQLLDKYIASGNPDIIDNVLIVQLLR
KICIDSNEGAILVFLPGWDDINRMREKLIANPFFKDSSRFIIIPLHSMVPYADQKVVFKR
PPLGCRKIVLSTNVAESSITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKANSKQR
EGRAGRCQPGICYHLFSKLRAASMLEFQVPEIKRMPIEELCLQVKLLDPDCKVEDFLLKT
LDPPVSEAVNSAVRVLQDIGAFTQDEELTELGEKLGYLPVHPLTCKMLFFAILMNCLDPA
LTLACASDFKDPFVIPMQPNERQKATAARHELASLYGGQSDQLTLIAAFDCWRNAKRKGL
EGNFCSQYFVSSSTMNFLFGMRMQLQGELIRHGFIPDDVSSCSLNANHRGILHAVLVAGL
YPMVGRVLPPKQDKELTTIEAANGCNVRLSGRSVNSRLKPKQLEECPLIIFDAITCGDMG
MYIRNCTVIGPLPLLFLATEIAVAPIKGNVCSDDDDEESDDGDACDTDGDEKLVVNKSGG
KEEKVLSSPDNSVMVVVDRWLSFRSTALNVAQIYCLRERLSEAILFKVMHPGEVLPPALG
ASVYAVACILSHDGLSGIPAPAESKSVHSTAINEPIPVVLQQQFLFHY
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagaataagactcccctagacgaagcctccgttttccgattaaccaagatactt
aagaagtttaacaaaggagaagataaagcgtataactttgaacccaacctttcaagaaaa
cagcgagcatttgtgcacaaggaatgcctgaaaatgggtttgatatccaaaaataaaggc
tctgggaaccagagacatgtctctgtccgtaaaatcaaagtgaaaggcggtgacatgcca
gggaagaatcttactgatgtcgcattttcaaagagggcaagtttggttttgcaggactta
ttttcaagttacccaccagatgatgaggagcttgaagagaaagaaattagaaaatatagc
ggaaaaactgctaaaatacgaagaaagaaagatgatattttctcgaagccaatgatgagt
gctgtggagattgcagagaaggttaaagaacttgcatctaagagagaaaagcatcccaaa
ctgagacagattaatgaggagagatcaaagcttccaattgctgggtttggggatgccatt
acatctgcagtagaatctaaccaggttatcctcatctctggcgagactgggtgtggcaag
acaacacaggttccacaattgcttttggactatatgtggggaaaaggtgaagcttgtaaa
atactgtgtactcagcctcggcgtatatcagctacatcagtgtccgagagaattgcttat
gaaagaggagaaagtattggcgataatgttggatacaagattcgcttggaaagtaaaggt
ggtcgacactcatccattgtcttctgcacaaatgggatgttattgagagtgctggtttca
aacagtagatcaaagagagaagacatctctgacatgactcacattattgtggatgaaact
catgaaagggacagcttctgtgatttcatgttggcaattatgagggacatacttccttcg
tatcctcatctacggctggtgctaatgagtgctactcttgattctgaacggttttcgcaa
tattttggtggttgcccaatcatccgtgttcctggatttacatatcctgtaaaaagtttc
tatttggaggatgtgctttctatcttgaaattcgcagatgctaatcatcttatttcagca
aatgcaactgcccaagatcaagaccaagaattaacagaagaagacccagaattcacagaa
gaagaactagaattaacagaagaagataagattgcattggatgaagctattagtttggct
tggtcaagtgatgagtttgatccgcttctagatttggtttctgtggaaggagggtcaaag
gttcataattaccagcattctttgaccgggctaactccactaatgttgtttgctgcaaag
ggtagagtggaggaggtttgcatgctcctctcatttggtgtagactgtgatcttatttcc
aaagatgggaagagtgctttggattgggctgtgcaggaaaaccagcaggaagctgtcaat
atgataaaaaaacatattgaaagttcccaagctaatgatgggcagcagttacttgataag
tatatagcctcaggtaatccagatatcattgataatgttcttattgtgcagttactaaga
aagatatgtatcgattcaaatgaaggtgctattcttgttttccttcctgggtgggatgat
ataaatagaatgagagagaaattaattgccaaccctttttttaaagattcctcccgattt
attataatacctctgcattcaatggttccttatgctgatcaaaaggtggtttttaagcgt
ccacctttgggctgccgcaaaattgtcctttcaaccaatgttgccgagagctccattaca
attgatgacgttgtctatgttatagatagtggtagaatgaaagagaaaagctatgatcca
tataataatgtatcaacccttcaatcttcatgggtctccaaagcaaattccaagcagaga
gagggtcgagctggccgttgtcagcctggaatttgttatcatcttttttcaaaacttcga
gcagcttcaatgctcgaatttcaagttccagaaattaagaggatgccaattgaagaactc
tgtttacaggtgaaattgcttgacccagattgcaaagtagaggatttcttgctgaagaca
ttggaccctcctgtttctgaagctgtaaatagtgcagttagagtccttcaagatattggc
gctttcacgcaagatgaagaactgactgaacttggagagaagcttggttatcttcctgtt
catcctttgacatgcaagatgcttttctttgcaatattgatgaattgccttgatccggct
ttgacactagcatgtgcttcggactttaaggatccatttgtcatacccatgcaaccaaat
gaaaggcagaaggctactgctgctaggcatgagcttgcatctttgtatggtgggcaaagt
gatcagctgacactcatagctgcttttgactgctggaggaatgcaaaaagaaagggtcta
gaaggaaatttttgttcacaatactttgtttcatcaagcactatgaattttctgtttggc
atgcgtatgcagcttcagggtgaactaatacggcatggatttattcctgatgatgtctca
agctgtagtctaaatgcaaatcaccgtggaatactacatgcagtccttgtggctggtttg
tatccaatggtggggagagtgctcccaccaaaacaggataaggaattgacgactatagag
gctgccaatggctgtaatgttcggttaagtggtcgctctgttaattcaaggttaaaaccc
aagcaacttgaagaatgccctttgattatatttgatgcaataacctgtggggatatggga
atgtacataagaaactgtactgttattggtccacttccattgttatttcttgcaacagag
attgcagtggctcctataaaaggcaatgtttgcagtgatgatgatgacgaggaaagtgac
gatggtgatgcatgtgacactgatggggatgaaaagttggtggttaataagtctgggggg
aaagaagaaaaagtcctgtcctctcctgataattctgttatggtggttgttgatcggtgg
ctatcgttcagatcaacggcacttaatgttgctcaaatatactgcctgagagaacggtta
tcagaagcaattttattcaaggtaatgcatccaggtgaagttcttcctcctgctcttggg
gcatctgtgtatgcagtagcttgcattctatctcatgacgggttatcaggcatcccagca
ccagcagaatctaagtcggtgcattctactgctataaatgaacctattccagttgtgttg
caacagcagttcctttttcactattga
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integrated database retrieval system
