Hibiscus syriacus (Rose-of-Sharon): 120188441
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Entry
120188441 CDS
T09559
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC120188441
KO
K06100
symplekin
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120188441
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsyr03021
]
120188441
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120188441
Transcription machinery [BR:
hsyr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120188441
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
120188441
U7-dependent histone pre-mRNA processing factors
120188441
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT
HEAT_2
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
120188441
NCBI-ProteinID:
XP_039047815
LinkDB
All DBs
Position
Unknown
AA seq
1325 aa
AA seq
DB search
MVGIMDPASREKLESLSNSVKFASDLGPKLEFCRQLKHDLLEEDAATLSEFLPRILDLYS
DPSGPVRKLATQIIGEIGVKHLEFVPEIAPFLITVLEDATPAVARQSIFCSIDLFRHTLE
KITIQGLQSSELASDLESSWSWLLKLKEKIYSIAFQPGSGGIRLVALKFVEAVILLYTPN
PNGSAEPPPNEGTPIDFNITWLHGRHPFLNVGDLSIEASQRLVLLLDQLRFPTVKSLTTS
VIVVLINSLSAIANKRPAYYGRILPVLLSLDPPSFVIKGVHVYGAHHXFENALLSCLKCT
HPSAAPWRDRLLGALKEMKAGGLAELALIQVNKINGSVEDNKDYSSAIKEEKPMTKACDA
VVSNVGRKRSGSEDSNDLAENDGVSGKRVRSSPSVSEEATKELNRNTSVYQGDISSIQST
KRKDDVDTGPVQQLVAMFGALVAQGEKAVGSLGILISSISADLLAEVVMANMRNLPPAHP
HTDADDELLEDMCIVGSDTQAKYPPSFLVDVVSLSSTFPPIASLLNSQQPVPDEIVIQKT
EAVEEDDSMAGLNSSVAYAGMGHEAENALLPGMEKIDVLTPSDIHDVGNLESDLPGLGSS
FHDDGLSDAQAATSLVSTDLEDASQEQGTSFGGKSPLHVLPSISVERSEEFSPKTTVNDS
GSVVSSTATSVVSSRSVVLPKMSAPVVNLSDDQKDAAQKLAYIRIIEAYKQISVAGGSQV
RSSLLAYLGVELPSELDLQSLLREHILLDYINHEGHELTLRVLYRLFGEAEAESDFFSCT
TAASAYETFLLAVAEILRDSFPPSDKSLSKLLGEAPHLPKSVLNLLECLCSPGISEKAEE
SQSGDRVTQGLSTVWSLILLRPPIRDVCLKIALQSAVHHLEEVRMKAIRLVANKLYPLPS
ISQQIEDFAKEILLSAVNVDAAERTDAEGLISESHKDSELEKPLNEHQSMSATGKDISAD
VHQSETSQSGSSPSVSEAQRCMSLYFALCTKKHSLFGQIFIIYGSASKAVKQAIHRQIPI
LVRTMGLSSDLLEIISDPPSGSENLLIQVLQTLTEGKVPSAELIFTIKKLFDSKLKDVEI
LVPVLPFLPGDEVLLLFPYLVNLPLDKFQVALTCLLQGSSQSGPVLSPAEVLIAIHGVDP
ERDGIPLKKVIDACNACFEQRSIFTQQVLAKVLNQLVEQIPLPLLFMRTVLQAIGAFPAL
VEFIMEILSRLVSKQIWKNPKLWVGFLKCALSTQPHSFSVLLQLPPPQLENALNRTAALK
APLVAHASQPNIRTSLPRSVLAVLGLATESQSSSQAQTSQAHTGDTSNSEKDAVAEKSKE
SSSAS
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atggtagggatcatggatccagcttcgagagaaaagctcgagagtttatccaactcagtg
aagtttgctagtgacttaggtccaaaactagagttttgtcgtcaattgaagcatgatttg
ttggaggaagacgctgccactttgtccgagttccttcctcgtatcttagacctttactcc
gacccgtccggtccggtccgcaaacttgctacccagataattggtgaaattggagtgaaa
cacctcgaattcgtacctgaaattgcaccctttctgataactgttttggaagatgctaca
cctgctgttgctcgacagtctattttttgcagcattgatttgtttcgtcatactctcgaa
aagattacaattcagggccttcagtccagtgaattggccagtgatcttgaatcatcatgg
tcgtggttgttaaagttaaaggagaagatatattctatagctttccagccaggaagtggt
gggataagattggtggcactgaagtttgtggaagcagtaattcttctttatactcctaat
cctaatggctctgcagagccccctcctaatgaaggaacccctatagattttaacataact
tggcttcatgggcgccatccttttctcaatgttggggatttgtcaattgaagctagccag
cgtttggttttgttgcttgatcagcttagatttccaacagtaaagtctctaacaacatct
gtgattgttgtgcttattaacagtctttcagcaattgcaaataagcggcctgcatattat
ggacgtattctaccagttttactcagtttggatcccccaagctttgttatcaaaggggtt
catgtctatggagcacatcatnactttgaaaatgccttactatcatgcttgaaatgtact
cacccaagtgctgcaccgtggcgggatcgtttacttggtgccttgaaagagatgaaagct
ggaggactggcggagctagctctcatccaagttaataaaattaatggaagtgtggaagac
aataaagattattcttcagctattaaggaagaaaaacccatgactaaagcatgtgatgct
gttgttagcaatgtggggaggaaaagatctggatctgaggacagtaatgatttggctgaa
aatgatggtgtgtctggaaaacgtgtcaggtcctcgcctagtgtatctgaagaagcaaca
aaagagttaaacaggaacacttctgtgtatcagggtgatatttcttcaattcaatctacc
aaaagaaaagatgacgttgataccggaccagtccagcaacttgttgccatgtttggtgcc
ttggttgctcaaggagaaaaagctgtgggatctttggggattcttatttcaagcatatct
gctgacttgctggctgaggtagtgatggctaacatgcgtaaccttcctcccgctcatcct
cacactgatgctgatgatgaattgctggaggacatgtgcatagttggaagtgacactcaa
gccaagtatccaccatcatttttagttgatgttgtttcactatcaagtactttcccgcca
atagcctcgctgctaaactcccagcaaccagttcctgatgaaatagtgatacagaaaaca
gaagcggttgaagaagatgattctatggctggccttaatagttctgttgcatatgctggc
atgggtcatgaagctgaaaatgctcttttgcctggaatggagaagattgatgtacttact
ccatctgacatccatgatgtgggtaatcttgaaagtgacttaccgggtttgggctcttct
tttcatgatgatggattatcagatgcccaagcagctacctcattggtctctactgatcta
gaagatgctagtcaagaacaaggtacaagttttggtggaaagtcacctctgcatgttctt
ccatcaatttcagtagagaggtcggaggagtttagtccaaaaacaacagttaatgattcc
ggcagcgtggtttcctcaacagcaacttctgttgtttcttcacgttctgttgtcttgccc
aagatgtcagcacctgttgtcaatctttctgatgatcagaaggatgctgcgcaaaagttg
gcttatatacgcatcattgaggcatataagcaaatatcagtagctggaggttcacaagtt
cgttcttctctgcttgcttacctgggagtcgagttaccatctgagttagacctacagagc
cttctaagagaacacatcttgttagattatatcaatcatgagggacacgagttgacattg
cgtgtcctctacaggttatttggagaggcagaagcggaaagcgatttcttctcatgtaca
actgctgcttctgcatatgaaacattccttctggctgttgctgaaattcttagggactct
tttccaccttcagacaaatctttaagtaaactacttggtgaagctcctcacctgccaaag
tcggttttgaatttattagagtgtttgtgttcacctgggatttcagagaaagctgaagag
tcacaaagcggagatagagttactcaaggcctcagcaccgtatggagcctaattctattg
agacctccaattcgagatgtgtgcttgaaaattgctttgcagagtgcagttcatcacttg
gaggaagtccgaatgaaagcaatacgcctggtagcaaataagctttaccctctaccatct
atttcccaacaaatagaagattttgcgaaggaaatactgctctctgcagtaaatgttgat
gctgcagaaagaacagatgctgaaggattaatcagtgaatcacataaggattctgagttg
gaaaaaccattgaatgagcatcagtcgatgagtgccactggtaaagacatctctgctgat
gttcaccagtcagaaacatctcagagtgggtcatccccttctgtctctgaggcacagcgg
tgcatgtctctgtattttgctctttgtacaaagaagcactctctttttggccaaatattt
attatctacggtagtgcatcaaaggcagttaagcaggcaatccatcgtcaaattccaata
ctggttcgtactatgggcttgtcatctgaccttcttgaaattatttcggatcctcctagt
ggaagcgagaatcttctgatccaggttttgcagacattgacagaagggaaggtaccttct
gcagaattgatatttaccatcaaaaagttatttgattcaaaactaaaggatgttgaaatt
ctagttccagtattgccattcctaccaggagatgaggttttgctgctttttccctatctt
gtaaatcttcctctggataagttccaagttgcacttacctgtttgctacaggggtcatct
cagtctggtccagtgctctctccagctgaagtgttaatcgctatccatggcgttgatcct
gaaagagatggaattcccttgaagaaggtcattgatgcatgtaatgcttgttttgagcaa
cgaagtatattcacccagcaggttcttgcaaaggtgttaaatcaattggttgagcagata
cctcttcctttgttgtttatgcgtacggtattacaggccattggtgcttttcctgcactg
gtggaatttataatggagattctttctcgacttgtaagcaagcagatatggaaaaatcca
aagctgtgggtaggatttttgaaatgtgccctctcgacacagcctcattctttcagcgtg
ctgcttcagctaccccctccacagcttgaaaatgcactgaataggacagcagcactgaaa
gctcctttggttgctcatgctagccaaccgaatatccgaacatcacttcctaggtccgta
ttggcggttttgggacttgctacagaatctcagtcctccagtcaggcgcaaacaagtcag
gctcacactggagatacaagcaactcagagaaggatgcagtggcagagaaatcaaaagaa
tcatctagtgctagctga
DBGET
integrated database retrieval system
