Hibiscus syriacus (Rose-of-Sharon): 120188595
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Entry
120188595 CDS
T09559
Name
(RefSeq) endoribonuclease Dicer homolog 1-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hsyr03036
]
120188595
Chromosome and associated proteins [BR:
hsyr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120188595
microRNA pathway
RISC loading complex
120188595
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
dsrm
PAZ
DND1_DSRM
Helicase_C
DEAD
ResIII
Dicer_dsRBD
Dicer_PBD
SWI2_SNF2
SNF2-rel_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120188595
NCBI-ProteinID:
XP_039047918
LinkDB
All DBs
Position
Unknown
AA seq
1954 aa
AA seq
DB search
MEDEGRVSGGNGSSYWLDACEDIPCDLINDFVDFDAPLVQDSVDNTSSQDFFGGIDHILD
SIKNGGGLPAVESNCNSSVVNGNGSGIHDSVVGDGLCTNELSLVSKNLPENLVPTPNGVE
KNNIESKGQEKNCDGSNSNLSDYSTKDNGVHRDDKRSSESRDRGLDSEERCGKRARTKGC
RSDRQYSSRGQYYPKERERSSARKRVRDWDDIVRRDREHVRRREHYYGGNRRDGRDREPR
GYWERDRSGSNEMVFKLGTWEADQQKEAKAANEKTQESNGKLEKKVEQPKEKGLEEQARQ
YQLDVLEQAKRKNTIAFLETGAGKTLIAVLLIKSIADDLQKQNRKVLSVFLVPKVPLVYQ
QAEVIRERTGFQVGHYCGEMGQDFWDARRWQREFETKQVLVMTAQILLNILRHSIIKMEA
INLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKI
RNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQIKQMEKTVEEAAQS
SSRRSKWQFMGARDAGAKEELHQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYK
VAQSFLTALQNDERANYQLDVKFQESYLNKVVSLLQCQLSEGAVAEKDMNIAEAERCNAQ
DGTDPDEIEEGELPDSHVVSGGEHVDVVIGAAVADGKVTPKVQSLIKILLKYQHTEDFHA
IIFVERVVAALVLPKVFAELPSLGFIRCASLIGHNNSQEMRTGQMQDTIAKFRDGRVTLL
VATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNVSHATFLR
NARNSEETLRKEAIQRTDLSHLKDTSRLISVDRVPGMVYQVESTGAIVSLNSAVGLVHFY
CSQLPSDRYSILRPEFIMKKHEKPGGPIEYSCKLQLPCNAPFEELEGPMCSSMRLAQQAV
CLAACKKLHEMGAFTDMLLPDKGSGEEAEKAEQNDEGDPLPGTARHREFYPEGVADILQG
EWILYGRDGADDLKLIRLYYYTIKCVNNGSSKDSFLTKVSDFAVLFGKELDAEVLSMSVD
LFIVRAMITKASLVFRGSIDITESQLASLKSFHVRLMSIVLDVDVDPSTTPWDPAKAYLF
VPVVGDKCVDPIKEVDWDLVDNIITTDAWNNPLQRARPDVFLGTNERTLGGDRREYGFGK
LRNGLAFGHKPHPTYGIRGAVAPYDVVKATGVVPSRDVLEVQEGDLTKGKLIMVDGFTHA
DHLVGRIVTAAHSGKRFYVDSICYDMTAETSFPRKEGYLGPLEYSSYADYYKQKYGVELR
YKRQALIRGRGVSYCKNLLSPRFDHSEGESEEAVDKTYYVFLPPELCFVHPLPGSLVRGA
QRLPSIMRRVESMLLAIQLKHIIQFPVPASKILEALTAASCQETFCYERAELLGDAYLKW
VVSRFLFLKYPDKHEGQLTRMRQQMVSNMVLYQYSLNKGLQSYIQADRFAPSRWAAPGVL
PVFDEDTKDGNTSLFDPEHATVDVLPGKVNGDGFDDDDMEDGEIESDSSSYRVLSSKTLA
DVVEALIGVYYVEGGKSAANHLMKWIGIQVESDPVEMESILKPSSVKETILKSVNFDALD
GALNLKFKNKALLVEAITHASRPASGVSCYQRLEFIGDAVLDHLITRHLFFTYTNLPPGR
LTDLRAAAVNNENFARVAVKHQLHVHLRHGSSALEKQIREFVKEVQDELLKPGFNSFGLG
DCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMHPVRELQERCQ
QQAEGLEYKASRSGNLATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKETAEAK
ENAEENGKKNGNQTFTRQTLNDICLRRNWPMPSYRCVSEGGPAHAKRFTFAVKVNTSDRG
WTDECVGEPMPSVKKAKDSAAVLLLELLNKWYSS
NT seq
5865 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgagggtagggtttctggtggcaacgggtcatcttactggttggatgcttgc
gaggacataccgtgtgacttgattaacgattttgttgatttcgatgcccctctagtccaa
gactcagttgacaatacttccagtcaagatttctttggtgggattgatcacattctcgat
agcatcaaaaacggcggtggccttcctgcagtggaaagtaactgtaatagctctgttgtc
aatggaaacggaagtggaatccatgactccgttgtaggggatggattgtgtaccaatgag
ctctctttggtttccaagaatctgcctgagaacttggttccaacacctaatggtgttgaa
aagaacaacattgaaagcaaagggcaggagaagaactgtgatggtagtaattcgaatttg
tctgattactctactaaggataatggagttcatcgagatgataaaaggtcatctgagtca
agggataggggtttagatagtgaagagagatgtggcaagagggctcgtacgaaaggctgc
aggagtgataggcagtattctagtagaggtcagtattaccccaaggaaagggagagatct
tctgctcgaaaaagggttcgtgattgggatgatatcgttaggagagatagagagcatgtt
aggagaagagaacattattatggtggtaataggagggatgggagagatagagaaccaagg
ggttattgggagagggatcggtcaggttccaatgagatggtttttaagttgggaacttgg
gaagcagatcagcaaaaagaagcgaaagcggctaatgaaaaaactcaggagtccaatgga
aagttggagaagaaagttgaacagccaaaggaaaaaggtttggaggagcaagctcgtcaa
tatcaattggatgttcttgaacaggcaaaaaggaaaaacacaattgcatttcttgaaaca
ggggcagggaagacactcattgctgttctcctcatcaaaagtattgctgatgatttacaa
aaacagaacagaaaagtgctctctgtctttttggttcccaaagttccactagtttaccag
caagctgaagttattcgtgagcgaactggtttccaagtaggccattattgtggggagatg
ggtcaggatttctgggatgctcgtaggtggcagcgtgagtttgaaacaaaacaggttttg
gttatgacagcgcaaattctgctgaatattttgaggcacagcataattaaaatggaagca
atcaatcttcttattctggatgagtgtcatcatgctgtgaagaaacatccgtattcactg
gttatgtctgaattctatcatacaacaccaaaggagaagagaccttctgtttttgggatg
actgcttctcctgttaacttgaagggtgtttcaagtcaagtcgattgtgcaataaagatt
cgtaatctagaaagcaagctggattctgtagtctgtacaataaaagaccgcaaggaactt
gagaaacatgtgccaatgccctcagaagttgtggtagagtatgacaaagcagccagttta
tggtcccttcatgaacaaataaaacaaatggaaaagacagttgaagaagcggcacagtcg
agctctagaagaagtaaatggcagttcatgggagctagagatgcaggagccaaggaagag
cttcaccaagtttatggtgtatctgaaagaacagaaagtgatggagctgctaatttgata
caaaagttgagggccattaattatgcacttggtgaattgggtcaatggtgtgcttacaag
gttgcacagtcatttttgacagcattacaaaatgatgagagggcaaactaccagcttgat
gtcaagtttcaagaatcttacctaaacaaagtcgtttctctcttacaatgccaattatcg
gagggagccgttgctgaaaaagatatgaacattgcagaagcagagagatgtaatgctcaa
gatgggactgaccctgacgagattgaggaaggagagctccctgacagtcatgttgtctcc
ggtggagagcatgtggatgtggtaattggagcggctgtagcagatggtaaagtgacccca
aaagtacagtccttgattaaaatactactcaagtatcagcacacggaggattttcatgcg
atcatctttgttgagcgagttgtggctgctttagttcttcctaaggtttttgctgagctt
ccatccctgggtttcatcaggtgtgctagtttgattgggcacaacaatagtcaagaaatg
cggactggacaaatgcaggatacaattgctaaattccgcgatggtcgtgtgacattgtta
gttgcgactagtgttgctgaggaaggattggatattcggcaatgcaatgttgttattcgt
tttgatcttgcgaaaactgttttggcatatattcagtctaggggtcgtgcaaggaagcct
gggtcagattacatcttgatgattgagagaggaaatgtatcacatgctacattcctaagg
aatgcaaggaatagtgaggagaccttgcggaaagaagcaattcagagaactgaccttagt
catctgaaggatacttcgaggttgatttcagtggatagggtgccaggtatggtgtaccag
gtcgaatcaactggtgctatcgttagcttaaattctgctgttggacttgttcatttttac
tgctctcagcttcccagtgacagatattcaatactccgtcccgagtttatcatgaagaag
catgagaagccagggggtccaattgaatattcttgcaagcttcagctcccatgtaatgca
ccatttgaagagcttgagggtcccatgtgcagttctatgcgtcttgcccagcaggctgta
tgtttggctgcttgcaagaagctccatgagatgggagcatttactgatatgctcttgcca
gacaaaggaagtggcgaagaagcagagaaggctgagcagaatgatgaaggagacccactt
cctggaactgctagacatagagagttctatcctgaaggtgtagcagatatactccaggga
gaatggatattatatggaagagatggcgctgatgacttgaaactaattcgtctctactat
tatacaatcaaatgtgtaaataatggctcttcaaaagattcattcttaactaaagtctca
gattttgcagtactttttggaaaagagctggatgcagaggtgttatcgatgtcggtggat
ctatttatcgttcgagccatgataaccaaggcatctcttgtcttcaggggatcaatagat
attactgaaagtcagctggcatcccttaaaagttttcatgtaagactgatgagcattgta
ctggatgtggatgttgatccttccactactccttgggatcctgccaaggcatatttgttt
gtccctgtggttggcgataagtgtgtagatcctataaaggaagttgattgggatttggtt
gataatataatcactacagatgcatggaacaatccccttcagagagctaggccagatgtt
ttccttggaacaaacgagaggacgcttggtggcgacagaagggagtatggatttgggaaa
ttgcgtaatggcctggcttttgggcacaaacctcatcctacttatggtatcagaggagcc
gtagccccatatgatgttgttaaagcgactggggtggttcctagtcgtgatgtgcttgag
gtacaagaaggggatttgaccaaaggaaaattgataatggttgatggcttcacacatgca
gatcatcttgttggaagaatagtaacagctgctcattcagggaagaggttttatgtagat
tcaatatgctatgacatgacagcagagacctcctttccgaggaaagagggctatcttggt
cctctagagtacagctcatatgctgattactataagcagaagtatggagttgagttgaga
tacaaaaggcaagctttaataagaggtcgtggtgtttcatactgcaagaatctcttgtct
cctcgatttgatcactcagaaggtgaatcagaggaggctgttgacaaaacatactatgtt
tttcttcctcctgagctgtgttttgtccatccacttcctggatcacttgttagaggtgcc
cagagattgccctctattatgaggagggttgagagcatgcttcttgcaattcaacttaag
cacataatacaatttccagtccctgcttcaaagattttggaagctttgactgccgcttca
tgtcaggagacattttgctatgaaagggcagagcttctgggggatgcttacttgaaatgg
gttgttagtcgctttttgtttcttaaatatcccgataaacatgagggacaactgaccagg
atgaggcaacaaatggtgagtaacatggtattgtatcaatattcactaaacaagggactt
caatcatatatccaagcggatcgctttgcaccatctagatgggctgctcctggggtattg
cctgtctttgacgaggatacaaaagatggaaacacgtccttatttgatccagaacatgca
actgttgatgttttaccaggaaaagtaaatggtgacgggtttgacgatgatgatatggaa
gatggtgagattgagagtgactcaagttcttatagagtcctctctagcaagaccttagca
gacgttgttgaagcgctaattggagtatattatgttgaaggtggcaagagtgcagctaac
cacctcatgaaatggattgggatccaggtggagtccgatcctgttgagatggaatctata
ttgaagccatccagtgttaaagaaaccatacttaagagtgtaaactttgatgccttagat
ggtgcattgaacttaaagtttaaaaataaggccttgttggtagaagctataactcatgct
tcacgtccagcatctggagtatcctgctaccagcgtttggagtttattggtgatgcagtc
ttggatcatcttatcacgagacatctatttttcacatacaccaatctgcctccaggccgc
ttgactgatttgcgagctgctgctgtaaacaatgaaaacttcgcacgtgttgcggtaaag
catcagctgcatgtgcaccttcggcatggatcaagtgctcttgagaaacagattcgggaa
tttgtgaaggaagttcaggacgagttattaaagccagggttcaactcattcggtttagga
gattgcaaagctccaaaagtacttggagatattgttgaatccattgctggtgccattttt
cttgacagcggacgtgacactgcagttgtctggaaggtttttcaacctctgttgcatccc
atggtgactccagagacattgccaatgcatcctgtccgggaactacaagagcgatgccag
caacaagctgaaggcttggaatacaaagccagtcgaagtggcaatttggctactgtggag
gttttcatagatggtgtccaagtgggagttgctcagaatccccaaaagaagatggcacag
aaactagctgcaaggaatgcgcttgctgtcttgaaggagaaagaaacagctgaagctaag
gagaacgctgaggaaaatgggaaaaagaatggcaaccaaacatttacaagacaaacattg
aatgatatctgccttcgtcgaaactggcctatgccctcctatcggtgtgtgagtgaaggg
gggccggcccatgcaaagagatttacgtttgctgtcaaagttaataccagtgacaggggg
tggaccgatgaatgtgtaggcgagccaatgcccagtgttaagaaggctaaggactctgct
gcggtgcttctcttggaactcttaaacaaatggtattcatcatga
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integrated database retrieval system
