Hibiscus syriacus (Rose-of-Sharon): 120188851
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Entry
120188851 CDS
T09559
Name
(RefSeq) pre-mRNA-processing factor 39-like
KO
K13217
pre-mRNA-processing factor 39
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsyr03041
]
120188851
Spliceosome [BR:
hsyr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
120188851
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
NRDE-2
TPR_16
TPR_12
Motif
Other DBs
NCBI-GeneID:
120188851
NCBI-ProteinID:
XP_039048166
LinkDB
All DBs
Position
Unknown
AA seq
814 aa
AA seq
DB search
MGDSEAVAADSSAMRDYTLAAYNSIGSGAYSSEVTADPTASGGDPNSAGEQGQISVIYDS
KPAGGSTDENALAVGNTAADESKAAGSNYPLNGNAVSEAGNATTVENGGVFDTVGGVSSV
PEFVDGSAPTLSGEEERLWSIVRANSLDFNAWTTLIEETEKLAGNNIMKIRKVYDAFLAE
FPLCYGYWKKYADHEARIGSMDKVVEVYERAVQGVTYSVDIWVLYCAFAVETYGDQETIR
RLFERGLAYVGTDYQSFPLWDKYIEYEYMHQEWSRLAAIYTRILENPNQQLDRYFNSFKE
LAGSRPLSELRTAEEAAANVSGAVSEADGQVNEGEVHPDVAEQTPKTVTAGSTEAEELEK
SVAIREELYQKAKELDSKIIGFETAIRRPYFHVRPLNVAELENWHNYLDFIEREGDFNKV
VKLYERCLIACANYPEYWIRYVLCMEASGSMDLANNALLRATQVFVKRQPEIHLFAARFK
EQNGDIQGAQAAYQLVHSEISPGLLEAIIKHANMEHRLGKIEDAFSLYEQAIAIEKGKEH
SQTLPMLYAQYSRFSYLVCGNAKKAREILAGTLDNVQLSKPFLEALIHFETILPPPRQID
YLELLVDKFIAPNSDGSAADKEDLSSIFLEFLNLFGDVQSIKKAEDRHAKLFLPRRPMSE
LRKRHAEEFLSSDKTKLAKSYTGAPSLGQSLMGAYPNAQNQWPGGYGAQPQTWPPTTQAQ
TQTQPQAQTWNSGYSQQAAYGAYGSYGSNYAAPQAPTAVPQIASYGAYPATTYPVQGFPQ
QSYGQPTAATSLNPAQQPPAAAAAPQAYYGPPYY
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgggagatagtgaagcagtagctgcagactcatcagcaatgagggattatactttagct
gcttataattctattggttctggtgcttactcctctgaggttacagcagatcctactgct
tctggtggtgacccaaattctgctggtgaacaaggtcaaatcagtgtaatatatgacagt
aagcctgctggtggatcaacagatgagaatgctcttgcagttggaaatactgcagcagat
gaatcaaaagctgctggttctaattatcctttaaatggaaatgctgttagtgaagcagga
aatgcaacaacagttgagaatggaggtgtttttgatactgtaggtggagtttcatctgta
cctgagtttgtggatggatctgcaccaactctgtctggtgaagaggaacgtttgtggagt
attgtgagagctaattcgttggattttaatgcttggactacattgatcgaggaaacagag
aagcttgcagggaacaatatcatgaaaattcgaaaggtttatgatgccttcttggccgag
tttcctttgtgctatggttattggaaaaagtatgcggatcatgaagcacgcataggctcc
atggacaaagttgtagaagtctatgaaagggcagttcagggagtgacatattctgtggat
atttgggtcctatattgtgcttttgccgttgaaacatatggagatcaagaaaccatccga
aggctttttgaacgaggattagcatatgttggaactgattatcaatctttccctctttgg
gataaatacattgaatatgaatacatgcaccaggagtggagtcgtcttgctgctatttat
actagaatattagagaaccctaatcaacagctagataggtattttaacagctttaaagag
ttggctggaagtcgacctttgtcagaattaagaacagccgaggaagctgctgccaatgta
tcaggtgcagtttcagaggctgatggacaagtcaatgaaggagaggttcatcctgatgtt
gcggagcaaactccaaaaactgtaactgctggctcaacagaagcagaagagttggagaag
tctgttgccattagagaagagctatatcagaaagccaaagagctcgattctaagatcatt
ggttttgaaacagctattagaaggccatactttcatgttcggcccctcaatgttgctgag
cttgaaaactggcataactacctggactttatagaaagagagggtgacttcaataaggtg
gtcaaattatatgaaaggtgccttatagcgtgtgccaattatcctgagtactggatacga
tatgttttatgtatggaagccagtggaagcatggatcttgctaataatgcccttttgcgt
gctacacaagtttttgtcaagaggcaaccagagatccatctttttgcggctcgattcaag
gagcagaatggggacatacaaggtgctcaagctgcatatcaactcgttcacagtgaaata
tcacctggtcttcttgaagcaattatcaagcacgcaaatatggaacaccgtctggggaaa
atcgaagatgccttctctttatatgagcaagctattgccattgaaaaaggaaaagagcat
tctcaaacattaccgatgctgtatgcacaatactctagattttcatacttggtttgtgga
aatgcaaagaaggctagggaaattttagctgggacacttgataatgtccaactgtctaaa
ccgttccttgaggccttaatacattttgaaacaattttgcctccaccaaggcagattgat
tatttagagttattagttgacaagtttatagccccaaactcagatggcagtgctgcagac
aaggaagatctatctagcatatttttggagttcttgaatctctttggcgatgtacagtct
attaaaaaggcagaagaccggcatgctaaactctttttacctcgtagacccatgtcggaa
ttaagaaaacgtcatgcagaagaatttttatcttcagataagacaaagcttgcgaaatct
tacacgggtgccccctcacttggtcagtctttgatgggtgcctatccaaatgcacagaac
cagtggccaggaggttatggcgcacagcctcaaacttggccacccactacacaggctcag
acacagacacagcctcaggcacaaacttggaattctggctacagccaacaggctgcatat
ggtgcatatggtagttatggtagcaattatgcagctccacaagcacccacagcagttcca
caaattgcaagttatggtgcttacccagctactacatatccggttcagggctttccacag
caaagttacggtcaaccaacagctgccacgagtttaaacccagcccagcaacctcctgct
gctgccgcagctcctcaggcttattatggacctccttattactga
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