Hibiscus syriacus (Rose-of-Sharon): 120190963
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Entry
120190963 CDS
T09559
Name
(RefSeq) WD repeat-containing protein ATCSA-1-like
KO
K10570
DNA excision repair protein ERCC-8
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03420
Nucleotide excision repair
hsyr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120190963
09124 Replication and repair
03420 Nucleotide excision repair
120190963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hsyr04121
]
120190963
03400 DNA repair and recombination proteins [BR:
hsyr03400
]
120190963
Ubiquitin system [BR:
hsyr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
120190963
DNA repair and recombination proteins [BR:
hsyr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
120190963
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
EIF3I
WDR55
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EML
WD40_MABP1-WDR62_2nd
WDR90_beta-prop_4th
Beta-prop_EIPR1
NBCH_WD40
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_SPT8
Beta-prop_Nup120_160
WD40_RFWD3
WD_LRWD1
Beta-prop_DCAF4
Beta-prop_IFT140_1st
Beta-prop_VPS8
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
120190963
NCBI-ProteinID:
XP_039049899
LinkDB
All DBs
Position
Unknown
AA seq
450 aa
AA seq
DB search
MWKEIGDREMGKIRPNSFSSQIKSNRISNLQLSNNKDIVSPHRGSINSLQVDLTEGRYLL
SGASDASAAVYDIQRPTNYEGNGLIAKHKCLFSVDKQHGKGHKYAISSAIWYPVDTGLFV
TGSYDHYIKVWDTNSTQVVMNFKMPGKVYRTVMSPLATSHMLIAAGTEDVQVRLCDIASG
AFAHTLSGHRDGVMAVEWSTSSEWALITGGCDGAIRFWDIRRAGCFLVLDQSQSQLGWRP
PVLARSAANKVSVSKSLSAGQNSLGKPRAPQKKYANGHGVKQSTIGRVPAKSSARQRLHP
GMLSIQDRATAHYGAVTGLKVTDDGMYLLSAGSDSRIKLWDLESGYNTLVNFEMVRLQTS
KAIQLAISQETAQVFVPCMTVVKAFDIWSGKMSLAFHGHYESVNCCWFSSQDQELYTGGN
DRQILVWSPCEPITDDMDAGHTKDQDNWSD
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaggaaatcggagatagagaaatgggtaaaatccgtccgaattccttttccagt
cagatcaaatccaatcggatatcgaatctccaactctccaataataaagacatcgtttct
cctcacagaggctccatcaattcccttcaggtggatttgactgagggaagatatttgtta
tcgggcgcatccgatgcatcagctgctgtttatgatattcaaaggccaactaactatgaa
ggaaatggtctgattgccaaacacaaatgtttgttttcagtcgataagcaacacggaaag
ggacataaatatgccatttcatcggccatttggtatcctgttgacaccggactattcgtt
acaggttcttatgaccattatatcaaagtttgggacacgaatagcacccaggtggtgatg
aattttaaaatgcctggaaaggtttataggactgtgatgtctccattggcaacatctcac
atgttgattgctgccggaactgaagatgtgcaagttcgcctttgtgatattgcttcgggg
gcatttgctcacactttgtctggtcaccgtgatggagtaatggctgtggagtggtctact
tccagtgagtgggccttgataactggtggatgtgacggtgcaattcgattttgggacatt
cgacgtgctgggtgttttcttgttctggatcagtcacagtctcaactcggatggcgtcca
cctgtcttggctcgttctgctgcaaataaggtctcagtctcaaagtcactgtcagcaggc
caaaactcattgggaaaaccacgagctccacaaaagaaatatgccaatgggcatggagtg
aaacagtcaaccattggtcgagtgccagctaagagttctgcacgacaaagattacatcca
gggatgctttccattcaagatcgtgctactgctcattatggtgctgtaactggtttaaaa
gtaacagatgatggcatgtaccttctaagtgcaggctctgattcaagaataaagttgtgg
gatcttgaatctggctacaacacacttgtaaactttgaaatggtgcgcctccaaacaagc
aaggcaattcagttggccatatctcaggaaacagctcaagtctttgtcccatgcatgaca
gttgtgaaagcatttgatatctggtcaggtaaaatgtcccttgcatttcatggtcactat
gaatctgttaactgttgttggttcagttcacaggatcaggaactatacacaggcggcaac
gatcgacaaattcttgtgtggtctccatgcgaaccgattacagatgacatggatgcaggg
catactaaagatcaggataattggagtgattag
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