Hibiscus syriacus (Rose-of-Sharon): 120193078
Help
Entry
120193078 CDS
T09559
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120193078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsyr03041
]
120193078
03009 Ribosome biogenesis [BR:
hsyr03009
]
120193078
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120193078
Spliceosome [BR:
hsyr03041
]
Complex A
U2 snRNP components
U2 related factors
120193078
Complex B
120193078
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
120193078
Ribosome biogenesis [BR:
hsyr03009
]
Eukaryotic type
90S particles
Helicases
120193078
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
nSTAND3
ResIII
SRP54
ABC_tran
FtsK_SpoIIIE
AAA_30
T2SSE
AAA_7
Flavi_DEAD
NACHT
PhoH
TniB
Motif
Other DBs
NCBI-GeneID:
120193078
NCBI-ProteinID:
XP_039051622
LinkDB
All DBs
Position
Unknown
AA seq
726 aa
AA seq
DB search
MGSERKRKVSLFDVVDETSAKISKSNGLGGLAMKNANNSINKWNGRPYSQRYCDILEKRK
TLPVWQQKEEFLQVLKSNQTLILVGETGSGKTTQIPQFVLDAVDMETPDKRRKMMVACTQ
PRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLE
RYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKV
PGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPHGDILVFLTGEEEIEDACRKITKEI
GNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPVKEDGPPGRKIVVSTNIAETSLTIDG
IVYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNN
DLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDE
GNLTKLGEIMSEFPLDPQMSKMLVVSSEFNCSNEILSIAATLSVPNCFVRPREAQKAADE
AKARFGHIDGDHLTLLNVYHAYKQNNEDQSWCYENFINNRALKSADNVRQQLVRIMTRFN
LKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDYKPE
WVVYNEYVLTSRNFIRTVTDIRGEWLVDVASHYYDLDNFPQCEAKRVLEKIYKKEEKDRE
ESRNRR
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgggttcggagaggaagagaaaggtgagcttgttcgatgtggttgacgagacatcggcc
aagatctcgaaatcaaacggtttaggtggcttagcgatgaagaacgcaaacaactcgatc
aacaagtggaatggaaggccatattctcaaaggtattgcgatatcttggagaagaggaaa
accctccccgtttggcaacaaaaagaggagtttttgcaggtgttgaagtcgaatcaaacc
cttatcttagtcggtgaaaccggtagcggtaaaaccactcagataccgcagtttgtattg
gatgccgttgatatggaaactccggataaacgtaggaaaatgatggttgcctgtacccag
ccgcgaagagtggctgcgatgtctgtttcgcgtcgtgttgctgaagaaatggatgtaact
attggagaggaggtgggttatagtattcgatttgaggattgcagtagtgcaagaactgtt
ttgaagtatttaacggatggtatgcttttaagggaagctatgactgatcctcttttagaa
cgatataaagtaattattctcgatgaagctcatgaaagaactttggcgactgatgtgttg
tttgggcttttgaaagaagttttgaagaatcgacctgaccttaagcttgttgttatgagt
gcaacactagaggctgaaaagtttcagggttacttttatggtgcaccacttatgaaggtt
cccggtaggcttcaccctgtggagatattttatactcaggaacctgaaagggattacttg
gaggctgcaatacggactgttgtgcagatacacatgtgtgaacctcatggtgatatactt
gttttccttactggagaggaggagatagaagatgcctgtcgtaaaataacaaaagaaatt
ggaaacatgggggatcaagtaggtcctgttaaagtagtgcctctttattcaactcttcca
ccggcaatgcagcagaagatttttgagcctgctcctcctcctgtgaaggaggatggccct
cctggaaggaaaattgtggtgtctacaaacattgctgaaacttccttgactatcgatggc
attgtttatgttattgacccagggttttcaaaacaaaaagtttacaacccacgagtgcgt
gtcgagtctttattggtatctcctatttcaaaggcgagtgcacatcaaagatctggacgt
gccgggagaactcaacctggcaaatgtttccggctctatactgagaagagttttaataat
gatctgcagccacagacctatcctgaaatattacgttcaaaccttgcaaatacagttctc
accttgaagaaactgggaattgacgatcttgtgcattttgattttatggacccacctgct
ccagagacattgatgcgggcattggaagtgctgaattacttgggagctctggatgatgag
gggaacttaacaaagttgggagagatcatgagtgaattccccctggatcctcaaatgtcg
aagatgcttgtagttagttcggagttcaactgttcaaatgagattctttcgattgctgcc
acgctttcagtacccaattgctttgtacggcctagggaggcacaaaaagctgcagatgaa
gcaaaagctcggtttggacatattgatggtgatcatctcacgcttttgaatgtgtaccat
gcttacaaacaaaacaatgaggatcaatcttggtgctacgagaatttcatcaacaataga
gcgctgaagtctgctgataatgttagacaacagctggtgcgcatcatgaccaggtttaat
ctcaagctgtgcagcactgatttcaacagccgtgactactatgtcaacattagaaaggcc
atgcttgctgggtatttcatgcaagttgctcatctggagcgtacagggcactacttgact
gttaaagacaaccaggtggtgcacttgcatccatcaaattgcttggattacaagccggag
tgggtcgtctacaatgagtacgttctgacaagccggaattttattcgtactgtgacagat
attcgtggtgaatggttagttgatgtagcatcacattattatgacctggataacttccca
cagtgcgaggcaaagcgagtccttgaaaagatttacaaaaaggaggagaaggatagagag
gagagtaggaacaggagatga
DBGET
integrated database retrieval system
