Hibiscus syriacus (Rose-of-Sharon): 120193827
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Entry
120193827 CDS
T09559
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120193827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsyr03021
]
120193827
03036 Chromosome and associated proteins [BR:
hsyr03036
]
120193827
Transcription machinery [BR:
hsyr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120193827
Coactivators
SAGA/TFTC/STAGA complex
120193827
Chromosome and associated proteins [BR:
hsyr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
120193827
STAGA complex
120193827
TFTC complex
120193827
SAGA complex
120193827
SLIK complex
120193827
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
Ge1_WD40
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
WD40_like
WD_LRWD1
Beta-prop_VPS8
MHC_II_alpha
LisH
DUF5659
Motif
Other DBs
NCBI-GeneID:
120193827
NCBI-ProteinID:
XP_039052189
LinkDB
All DBs
Position
Unknown
AA seq
668 aa
AA seq
DB search
MENMQAVNNFVAAYLKKKGFKEAERLLEDLQNKDSAPIDFHNDPELAKFIHRFSQSEDDV
ARYQDGYSKLRSWTYSSLDLYKHELLRVLYPVFIHSFMDMVAKGHLQEARTFFNTFREDH
ELMHSRDLQKLEGVLSQSHLEEMEFARSLRQSKVNIKICQYSYDLLLQYLHKTQSTAMLG
VINEHINFQVSSGQPSSLSDDAEVVTLIGSFQDAANQINQKEIHWGLLEDSLEERMEKAG
SLLSDSEKTEEENKEGDVDETKKRSVESGKQGASTKKLKKEKGLNATAKSARTEASTTPA
APRVKSKLPLPLMSTEVEQSILEDLRNRVQLSSVLLPSVSFYTFLNTHNGLNCSSISQDG
SLVAGGFSDSSLKVWDMAKMGQQGGSSILQAENDSTSSEHVVGQNGGKRSYTLFQGHSGP
VHSATFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPAGHYFASASH
DRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQNGECIRIF
IGHRSMILSLAMSPDGRYMASGDEDGMIMMWDISSGRCITPLMGHTSCVWTLAFSCEGSL
LASGSADCAVKLWDVTTSAKVPRNEEKSGNTIRLRLLKTLATKSTPVYSLQFSRRNLLFA
AGALSKNM
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatatgcaggcagtgaataacttcgtagcagcttatttgaagaagaaaggattc
aaagaagcggagcgattgttagaggatcttcagaataaggactccgctcctatcgatttc
cacaacgaccctgaactagctaagttcattcaccgcttctcccagtcggaggatgatgtg
gcacgttaccaggatgggtatagcaaactgaggtcatggacttatagttcgctagattta
tataagcatgaattgcttcgtgtgctttatcctgtctttatacattcgttcatggatatg
gtggcaaaaggacatctgcaagaggctagaactttcttcaatacttttcgtgaagaccat
gaattgatgcactcacgagaccttcaaaagttggaaggggttctttctcagtctcatttg
gaggagatggaatttgctcgttctcttaggcagagtaaagttaacatcaagatatgtcag
tattcgtatgatcttctgttgcaatatttgcataaaacgcaatccactgcaatgcttggg
gtcataaatgaacacatcaactttcaagtttcttctggacagcccagttccctttctgat
gatgcagaggttgtaacacttattggaagcttccaggacgctgctaatcagataaaccag
aaagaaatacattggggattgcttgaagactccctagaagaacgcatggagaaagcagga
agtttgctttctgattctgaaaagacagaagaagagaacaaagagggggatgtagatgag
actaagaaaagatcagttgaaagtggaaagcaaggtgcttcaacgaaaaagttgaaaaag
gagaaaggtcttaatgcaacagcaaaaagtgctcgtactgaggctagcacaacccctgct
gcaccacgagtcaaatcaaagctacctttgcccttaatgtcaacagaagtagagcagtct
attcttgaggatttaagaaatcgtgtacaattgagcagtgttttattgccatctgtcagc
ttttatactttcctcaacacacataatggtttgaattgttcatcaatatcccaggatgga
tctttggttgctggaggcttctcagactcatcactgaaggtttgggatatggcaaaaatg
ggccaacaaggtggcagttctattttgcaggccgaaaatgattctacttcaagtgaacat
gttgtggggcaaaatggtgggaaaaggtcatatacattgtttcagggtcattcaggacca
gttcattcagccacctttagtcctcttggtgattttattctttcttcttcagcagatacc
acaattcgcttatggagcacaaaactaaatgcaaatcttgtttgctacaagggtcataat
tatcctgtctgggatgttcagtttagtcctgcgggtcactattttgccagtgcttctcat
gatcgaacagcaaggatttggtcgatggacagaatacaacctctgagaataatggcaggg
cacttgtctgatgttgattgtgtgcaatggcatgcaaactgcaactatattgccacggga
tctagtgacaaaacagtcagattgtgggatgtacaaaatggagaatgcattcgaattttc
attggtcatagaagtatgatattgtcattagcaatgtcgcctgatggtcgatatatggca
tctggtgatgaagatggcatgatcatgatgtgggacatttcaagcggaaggtgcattaca
cctttgatgggtcacacatcgtgcgtgtggacactagctttcagttgcgaaggttcgctt
ctggcatctggatctgctgattgcgctgtaaaattgtgggatgtaacaacaagcgcaaag
gtccccaggaatgaagaaaagagtgggaatacaatcaggctgagattgttgaaaaccctt
gcaaccaagtccactccggtgtatagtttgcagttttctagaaggaatctgctatttgct
gctggggcgctgtcaaagaacatgtaa
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integrated database retrieval system
