Hibiscus syriacus (Rose-of-Sharon): 120194655
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Entry
120194655 CDS
T09559
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120194655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120194655
03041 Spliceosome [BR:
hsyr03041
]
120194655
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120194655
Spliceosome [BR:
hsyr03041
]
Complex B
Other components
Prp19-related factors
120194655
Complex C
120194655
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_19
ARM_TT21_C
NRDE-2
Motif
Other DBs
NCBI-GeneID:
120194655
NCBI-ProteinID:
XP_039052835
LinkDB
All DBs
Position
Unknown
AA seq
914 aa
AA seq
DB search
MSLAKELYPSQDDLLYEEELLRNPFSLKLWWRYLIARSDAPFKKRFIIYERALKALPGSY
KLWHAYLRERLELVRNLPVTHPQYENLNNTFERALVTMHKMPRIWIMYLSTLTEQKLIIK
TRRAFDRALCALPVTQHDRIWEPYLVFVSQRGIPIETSLRVYRRYLKYDPSHIEDFIEFL
VNSSLWQEAAERLASVLNDDQFYSIKRKTKHRLWLELCDLLTTHATDVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRNLFEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESMV
ALKMENMDLSDEEEDDVEEDEEDIRLDIALCKSKSKFEKKIFKGFWLHDDNDVDLRLARL
EHLMNRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTIDPMKAVGKP
HTLWVAFAKLYETYKDLANARVIFDKAVQVNYKTVDHLASVWAEWAEMELRHKNFKGALE
LMRRATAEPSVEVKRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGTLESTRAVYERIL
DLRIATPQIIINYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKS
KLERARELFEHAVETAPSDAVKPLYLQYAKLEEDFGLAKRAMKVYDQATKVVPNHEKLGM
YEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLRYAELEKSLGEIDRARGIYVF
ASQFADPRSDADFWDKWREFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPECLMQKDH
NIDEAIDKLKEAGVSEDEMAALERHLLPAADNTVAKDNSRKVGFVSAGVESQADGGMKTT
ANIEDIDLPEESDSDEERVEIAQKDVPSAVFGGVRKREDGNDNDGKDDASAAKDKGGKGL
LGALERIKRQKQAQ
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctggcaaaggaactatacccatctcaagatgacctcctttacgaagaggaactg
ttgagaaacccctttagtttgaaactctggtggaggtatttaatagctagatcagacgcc
cctttcaagaaaagatttataatatacgagcgagccttgaaagctttgcctggcagttac
aaactttggcatgcttatttgcgtgagcgtcttgaacttgttcgtaatttacctgttact
caccctcaatatgaaaaccttaataatacttttgagagggcgcttgtcacaatgcataag
atgcctaggatttggataatgtacttgtcgacgttaactgagcagaagttgattatcaag
acacgcagggcgtttgatcgagcgctttgtgcattgcctgtgactcaacatgatagaatt
tgggaaccttacttagttttcgttagtcaaaggggtatccccattgagacatcgcttagg
gtttataggagatatttgaagtatgatcctagtcatattgaggattttattgagtttttg
gtgaattcaagtctgtggcaagaagcagcggagaggttagcatctgttttgaatgatgat
cagttttattcgataaagcgtaaaaccaagcataggttgtggttagagttgtgtgacttg
ctcacaactcacgcaacagatgtttcggggctcaacgtggatgcaataatcagaggtgga
attagaaaatttacagatgaagttgggagactttggacttcacttgctgattattacatc
agaagaaatctgttcgagaaggcaagggatatttttgaggagggaatgacgactgtggtt
accgtgagggatttcagtgtcatatttgatgcttattcacaatttgaagagagtatggtt
gctcttaaaatggagaacatggatttgagtgatgaggaagaagatgatgttgaagaggat
gaagaggacatccgtttggacattgctttatgcaaatcaaaatcaaagtttgagaagaag
atatttaaggggttttggttacatgatgataatgatgttgatttgaggttggctcggtta
gagcatttaatgaatagaaggcccgaactggctaatagtgtccttttgcgccagaatcca
cataatgtggagcaatggcatcgtagggtcaagctatttgagggaaatcccaccaagcaa
atattgacatacacagaggcggttaggacgattgacccaatgaaagctgtcggaaagccc
catactttgtgggtggcttttgcaaagctatatgagacttataaagatctggcaaatgct
cgtgtcatttttgataaagctgttcaagtaaattacaagactgttgatcacctggcaagt
gtatgggctgagtgggcggagatggaactgaggcataaaaatttcaaaggggcactggag
ctgatgagacgtgccacagctgagccttctgttgaggtcaaacgaagagtggctgctgac
ggaaatgaacctgttcagatgaagctacataaatccttgaggctgtggacgttctatgta
gacttggaagaaagtttgggtactctggagtcaactcgagcagtttatgagagaatactg
gatttaagaattgctactccacaaattattataaactatgcatttttattggaggaaaac
aaatattttgaagatgctttcaaagtatatgaaagaggtgtcaagatattcaagtatccg
cacgtgaaggatatatgggtcacttatttgtcgaagtttgtaaagagatatgggaagtca
aaactggaacgagcaagggaactgtttgagcatgccgttgaaacggcaccttctgatgca
gtaaaacccctttatcttcagtatgccaagctggaggaggattttgggctagcaaagcga
gctatgaaggtctatgatcaagcaactaaagttgttccaaaccatgagaaacttggcatg
tatgagatttacattgcccgtgcagctgagatctttggtgttccaaaaacgagagaaatt
tatgagcaggcaatagagtctggtcttccggataaagatgtgaagacaatgtgtttgcga
tatgcagagttggaaaagagcttaggagaaattgatcgtgcccgtggaatatatgtattt
gcatcccagtttgctgatccacgctctgatgcagatttttgggataaatggagggagttt
gaggtgcaacatggaaatgaagatacattcagagaaatgttgcggattaaacggagtgtc
tctgcaagttatagccagacacacttcattcttcccgagtgtctgatgcagaaggatcat
aacattgatgaagctatagacaaattgaaagaggcgggtgtgtccgaggatgaaatggct
gctcttgagaggcatttattacctgctgctgataatactgttgccaaagacaactctagg
aaagtagggtttgtgagtgctggagttgagtcacaggcggatggtgggatgaaaacaaca
gcaaatattgaagatatcgatttgccggaggaaagtgattcagacgaagaaagagttgaa
attgctcagaaagatgtcccatctgctgtgtttggaggtgttagaaagagggaagatggc
aatgacaatgatggtaaagacgatgcctctgctgccaaagacaagggtgggaagggacta
ctgggtgcacttgagcgaatcaaaaggcagaagcaagctcagtaa
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