Hibiscus syriacus (Rose-of-Sharon): 120198113
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Entry
120198113 CDS
T09559
Name
(RefSeq) uncharacterized protein LOC120198113 isoform X1
KO
K06100
symplekin
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120198113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsyr03021
]
120198113
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120198113
Transcription machinery [BR:
hsyr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120198113
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
120198113
U7-dependent histone pre-mRNA processing factors
120198113
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
DUF7551
CRM1_C
Motif
Other DBs
NCBI-GeneID:
120198113
NCBI-ProteinID:
XP_039055421
LinkDB
All DBs
Position
Unknown
AA seq
1331 aa
AA seq
DB search
MNVVDSRDQALSLLTAALNHSDLAVKLSSLKQARDILSSLDSSSAADLFPYVADLQRSPH
TLVRKFLLEIIEDIALRTIEHSAVLVPVLVAFLRDVDSDVVKQSIVTGTHFFCSVLEEMT
LQFQQYGKVDQWVQELWMWMVRFKEGVFSIALQPGPVGIKLLALKFLETYILLFTPDNGY
HEKFEATRGSRRTFNISWLGGTHPILDPVSLTSDANKTLFVLLDMLQPVSCLPGAVTINI
VNCLAAIARKRPLHYGTVLSALLDFNPNFETVRECHKASIQYSLRTAFLGFLRCTYPAIL
ESRERLLRALRAMNAGDAADQVIRQVEKLIKNSERERASRDDQASSQAYILGDVSKKRSM
SQDNEELTNSFEMASKRIRSGPNSHSTLTPPTQINDSGQDFSSVNGASPNIPLSDDNLTP
VEQMIAMIGALLAEGERGAESLEILISKIHPDLLAEIVITNMRHLPKSPPPLSKVGTLPT
TQQAISVNSRVQVVPPPVPTNLHPPVSTPQLPVTSAATTGSSISDTSTVNNFAADSKRDP
RRDPRRLDPRRAAVVGMSSTPVLEDSGTAMSEFDGSISNKPLSVPVVETPPVRSMHNIQS
NDMIIEGSSIAGVEQPSPEGDVGGEEDIAPILEVNSSTNRTVSPYMDVVESAELKADAEV
KHETEESLSPESDQNFLGSITISSLDETGRDLPVLPLYVELTEEQKRSVRKSAVQQIAES
YLHLYWSDCNETRMALLSRLVAQIDAGDDIIVMLGKQIVVDYQQQKGHEIVLQVLYHLYS
LTVTNSVDNSSYAAVLYEKFLLEVSKSLLDTLPASDKSFSRLLGEVPFLPDSALKLLDDI
CSSDVFDITGKEIRDAERVTQGLGVVWSLILGRPNNRQACLGIALKCAVHSQDDIRGKAI
RLVANKLYQLNYISGEIEKFATNMLLSAVDQRAAGSEFMQFGSIDERVEREVGSADMSTS
GSQLSEPRASGIDPGNTESASNSLSVVSFPEAQRLISLFFALCTKKPSLLQLLFDIYGRA
PKVVKQAFHRHMPIVIRALGQSNSQLLRIISDPPQGSENLLTLVLQVLTQETTPSLDLVA
TVKHLYETKLKDATILIPMLSSLSKNEVLPIFPRLVDLPLEKFQLALAHILQGSAHTGPA
LTPAEVLVAIHDIVPEKGGPPLKKITDACSACFEQRTVFTQQVLAKALNQLVDQVPLPLL
FMRTVIQAIDAFPTLVDFVMEILSKLVSKQIWRMPKLWVGFLKCVVQTQPHSFPVLLQLP
PPQLESTLNKYDSLRSSLASYASQSNIKGSLPRSTLAILGLANEQHTQPQQQPHMPNLHS
SDTSVQGATPT
NT seq
3996 nt
NT seq
+upstream
nt +downstream
nt
atgaacgttgtagattctagagaccaagccctctctctcctcaccgccgctctcaaccac
tccgacttggccgtgaagctttcctctcttaaacaggccagggacattctttcctctctc
gattcttcctccgccgccgatctcttcccctacgtagccgacctccagcgttctcctcat
actctcgtcaggaaatttcttctcgagataattgaagatattgcattgagaacgatagag
cattctgctgtacttgtaccagttttagtagcgttcttgagggatgttgactcagatgtt
gtgaaacaatctattgttactggcacacacttcttctgcagtgtcctggaagaaatgaca
ctacagtttcagcagtatggaaaagttgaccagtgggttcaggaactatggatgtggatg
gttaggttcaaggaaggtgtgttttccattgcattgcagcctggtccagttgggataaag
ttgctggcgctgaaatttttggagacatacatcttgctttttacgcccgacaatggttat
catgaaaagtttgaagctaccagaggaagtagacggacttttaatatatcatggctaggt
ggtactcatcctattttggatccagtttctctaacatcagatgcgaacaagactcttttt
gttttacttgacatgttgcaaccagtcagttgtctccctggagctgtaacaatcaatatt
gtcaattgtcttgctgccatagcaaggaagagacccctccactacggcactgttctttct
gcactgcttgattttaatccaaactttgagacggtgagggaatgtcataaagccagtatt
cagtattccttgaggactgcatttttgggattcctgaggtgtacttatccagccattcta
gagtcgagagagagattgcttagagctctacgagcaatgaacgcaggggatgctgctgat
caagtcatcagacaggttgaaaagttgataaaaaatagtgagcgtgagcgtgcttccagg
gatgatcaagcatcaagccaagcatatattttaggggatgtgtcaaagaaaagatctatg
tctcaagataatgaagaactaacaaatagttttgaaatggcctccaagcgtattcgctct
ggtcccaattcccactcgacactcacaccacccactcaaattaacgattccgggcaggat
ttttcttctgtaaatggagcatctcctaatattccactttcggatgataatttaactcct
gttgagcaaatgattgcaatgattggtgctttacttgcagaaggagaaagaggtgctgaa
tctcttgaaattcttatttcaaaaattcatcctgacctgctggctgagattgtcatcaca
aatatgaggcacttgcctaaaagtcctcctccattatcgaaggttgggacactgcctaca
actcagcaagccattagtgtaaatagtcgggttcaagttgttccacctcctgttccaaca
aatttgcaccctcctgtttccacaccccaactgcctgttacttcagctgctacaactggt
tcatccatatctgatacatctactgtcaataattttgctgcagattcaaaacgcgaccca
agaagggatccccgtcgcctagatccacgacgggctgctgtagttggaatgtcatccaca
cctgttctggaggacagtggaactgcaatgtctgaatttgatggttctatttctaataag
cctctttcagtgccagttgtcgaaacccctcctgtgcgctctatgcataacattcaaagc
aatgatatgataatagaaggttcatcaattgctggtgttgagcaaccatctcccgaagga
gatgtgggtggtgaagaagacattgctccaattctagaggtcaatagttctaccaaccgc
acagtttctccatatatggatgttgtagaatcagctgaattgaaagcagatgccgaagtg
aaacacgagaccgaagaatcattgtctccagagtctgatcagaatttcctaggttctata
accatatcttctttggatgagactggtcgtgatttacctgtgctaccattatatgttgag
ctaactgaagagcagaaaagaagtgtgagaaaatcagcagttcaacagattgctgaatca
tacctgcatctttattggtcagactgtaacgaaacgcgcatggcattactttcccgtttg
gttgcacagattgatgccggtgatgacattatcgtcatgttggggaaacaaattgtcgtg
gattaccaacaacaaaagggtcacgagattgtattgcaagttctgtaccatctttattct
ctcacagttacaaattcagttgacaactcttcatatgctgctgtcctttatgaaaaattt
ctcctggaagtgtccaaatctttgctggacactcttccagcctcagataagtcatttagc
agacttcttggtgaagttccatttctgcccgactctgccttgaaactattagatgatatc
tgctcttctgatgtgtttgatattactgggaaagagattcgtgatgctgaacgtgtgacg
cagggccttggtgtggtctggagtttaattttgggacgtccaaataatcgacaagcctgc
ttaggtatagcactgaagtgtgctgttcattctcaagatgacattcgagggaaagctatc
aggctggttgcaaacaaactttatcagctgaactacatatctggggaaattgagaaattt
gcaacaaatatgttgctgtcggctgtggatcagcgtgctgcaggttccgagtttatgcag
tttggatccattgatgaaagagtcgaaagggaggttggaagtgcggacatgtctactagt
ggatctcaactttcagagcccagagcatctggaattgaccccggaaatacagaatcagca
agtaatagtctttcagtagtgtcatttcctgaagctcaacgactcatttctctgtttttt
gctttatgcacaaagaagcctagtcttcttcaactcttatttgatatttacgggcgagca
ccaaaagttgtaaagcaggcttttcatcgccatatgcctattgtaattagagccttgggt
cagtctaattctcagttgctccgaataatatctgacccaccccaaggaagtgaaaatctg
ttaacactggtgctgcaagtattgacccaagagacaactccctctcttgatttagtagcc
actgtgaagcatttatatgagactaagctgaaggatgctaccattcttattccaatgcta
tcttcactttccaagaatgaggtgttgcctatttttcctcggcttgttgaccttccactg
gaaaagttccagctggcacttgctcacatattgcagggttcagcccacacaggtcctgcc
ttgacccctgctgaagtattggtagctatccatgacatcgttcctgaaaaaggtggtcct
ccactcaaaaagataacagatgcttgctcagcttgtttcgagcagcgcacggttttcaca
cagcaggtcttagcgaaggccttgaatcagttggttgatcaggtccctcttccgttactt
ttcatgagaactgttattcaggcaattgatgcttttcctaccctggtcgattttgtcatg
gaaatcctatccaaacttgtgagtaaacagatctggagaatgccgaagctgtgggttggg
ttcttgaagtgtgtggttcagacacaacctcattcatttcctgtattattacagttgcca
ccgccgcaactggagagcacactgaataaatatgacagtctcaggagttccctagcttct
tatgcaagccaatcaaatataaaaggttcactgcctagatcaactcttgcgattctcggt
cttgcaaatgagcagcatacgcagccgcagcagcaaccacatatgccaaacttgcattct
tcagacacttctgttcagggagcaactccgacataa
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