Hibiscus syriacus (Rose-of-Sharon): 120202300
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Entry
120202300 CDS
T09559
Name
(RefSeq) coatomer subunit alpha-1-like
KO
K05236
coatomer subunit alpha
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsyr04131
]
120202300
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hsyr04147
]
120202300
Membrane trafficking [BR:
hsyr04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
120202300
Exosome [BR:
hsyr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120202300
Exosomal proteins of bladder cancer cells
120202300
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
TPR_COPA_B
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_IFT122_1st
WD40_RFWD3
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
120202300
NCBI-ProteinID:
XP_039058677
LinkDB
All DBs
Position
Unknown
AA seq
1218 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTMIDRFDEHDGPVRGVHFH
MSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEHPWIVSASDDQTIRIW
NWQSRNCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGSLKKKTASPVDDILR
LSQMNSDLFGGVDAIVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRTNDTKAWE
VDTLRGHMNNVSCVMFHSKQDIIISNSEDKSIRVWDGTKRTGLQTFRREHDRFWILAIHP
DLNVLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLKYYDFSSQRESQAVTIRRPG
STTLNQSPRTLSYSPTENAVLICSDVDGGSYELFVIPKDNIGRGDSSQEAKKGLGSSAIF
VARNRFAVLDKGNNQVLIKNLKNEVVKKSGLPVPTDAIFYAGTGNLLCRSEDRLVIFDLQ
QSIVLGDLQTPFVRYVVWSNDMQSVALLSKHTIVIANKKLVHQCTLNETIRVKSGAWDDN
GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNKTIVIDATEYI
FKLSLLRKRYDHVMSMIRNSQLCGEAMIAYLQQKGFSEVALHFVKDEKTRFKLAIESGNI
QIAVASAKEIDDKDHWYRLGLEALRQGNAGIVEYAYQRTKNFERLSFLYLINGNLEKLSK
MLKIAEVKNNVMGQFHNALYLGDIRERVKILENAGHLPLAYVTASVHGLQDVAERLASEL
GDDVPPLPEGKEPSLLMPPAPVMCGGDWPLLRVMKGIFDGGLDNIGRGAVDEEEEDAGGD
WGENLDVVDVDGLQNGDVTEISEYGEVTEENEEEEGGWDLEDLELPPEVDTPKVSGSARS
IFVAPTPGMPVSQIWIQKSSLAAEHAAVGNFDTAMHLLSRQLGIRNFAPLKSMFLDLHAG
SHSHIRAFSSAPVVSLAIERGWNESASPNVRCPPALVFNFSQLDEKLKAGYKATTAGKFT
EALRLFLSILHTIPLIVVESRREVDEVKELIIIAKEYVLGLQIEIKRREMKDNPVRQQEL
AAYFTHCNLQMPHLRLALQNAMVVCSKAKNWATAGNFARRLLETSPTNENQAKAARQVLQ
AAERNMTDAAQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCTARFVPSQEGQLCTVCDL
AVVGADASGLLCSPSQIR
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgttgacaaagtttgagacgaagagtaatagagtgaaagggctgagtttccactccaag
aggccgtggatcttagctagtctccacagtggtgttatccagttatgggactatcgaatg
ggcactatgattgatcggttcgacgaacatgatggccctgttcgcggcgtccatttccat
atgtctcagcctttgtttgtatctggaggggatgactacaagattaaagtctggaactac
aagttgcatagatgtcttttcacacttcttggacatcttgattatattcgtactgtgcaa
tttcatcatgagcatccatggattgtaagtgccagtgatgatcagactattcgcatttgg
aactggcagtcacgaaattgcatctcagttttgactggtcataatcattatgttatgtgt
gcgtcattccatcctaaagaagaccttgttgtgtcggcctcccttgatcagactgttcga
gtttgggatattggttccttgaaaaaaaagactgcctccccggttgatgacattttacgg
ctgagtcagatgaactcagatctttttggtggggttgatgcaatagttaagtacgtattg
gaaggtcatgaccgaggagtaaattgggctgcatttcatcccaccctacctttgatagta
tctggagcagatgatcgccaagtcaaattgtggcgtacgaatgatacaaaggcttgggaa
gtggataccttgagaggacacatgaataatgtttcatgtgttatgttccattccaaacaa
gacattattatatctaattctgaggataaaagcattcgtgtgtgggatggaacaaagcga
actggacttcaaactttccgtcgagaacatgacagattttggatacttgctattcatcct
gatttgaatgttttagcagctggacatgacagtggcatgattgtatttaagctagagaga
gagcgtcctgcttttgcagtgagtggtgattcgctgttttatgccaaggatcgttttctt
aagtattatgacttttcaagtcagagagaatcacaagcagttacaattcgacggcctggt
tccacaacactgaatcaaagtccaagaactctttcttacagtcctaccgaaaatgctgtt
cttatatgctcggatgtggatggaggatcttatgagttgtttgtgataccaaaagacaac
attggtaggggtgacagttcgcaggaggcaaagaaaggtctgggtagttctgctatattt
gtggcccgaaaccggtttgctgtccttgacaaaggaaacaaccaagttttaatcaagaat
cttaaaaatgaagtggttaaaaagagcggcctaccagtgcctacggatgcgatattttat
gctggaacaggtaatttgttgtgtaggtcagaggatagattagtaatatttgatctacag
cagagtattgttcttggtgatcttcaaaccccttttgtgaggtatgttgtttggtctaat
gacatgcagagtgttgctttgctcagcaagcataccattgtcattgctaacaagaagctt
gtgcaccagtgcactctcaatgagacaatacgtgttaagagtggagcctgggatgacaat
ggcgttttcatatacaccaccctaaaccatataaagtactgccttcccaacggggatagt
ggaataattcgaacacttgacgttccaatttacataaccaaggtttctggaaatacaatc
ttttgcctggatcgtgatgggaagaataagactatagtcattgatgctacagaatacatt
ttcaagctctctctgcttcgaaagagatatgatcatgttatgagtatgataagaaactcc
cagctttgtggtgaggccatgattgcttatctgcaacagaaggggttcagtgaagtagcg
cttcattttgtcaaagatgagaaaacacgctttaagttggctatagagagtgggaacatt
caaattgctgttgcatcggctaaggagatcgatgacaaagatcattggtataggttgggt
ttggaggcccttcgccaaggcaatgctggtatagttgaatatgcctaccagaggacaaag
aactttgagaggttgtcttttctttatctcataaatggtaacctggaaaagttgtccaag
atgctgaaaattgccgaagttaagaataatgttatgggtcagtttcacaatgctctgtat
cttggtgatatccgagaacgtgttaagatcttggagaatgctggtcacttgcctcttgct
tatgttacagcatcagtacatgggctacaggatgttgcagaaaggctggcatccgagttg
ggagatgatgtccctcctttgccagaggggaaagaaccttccttgttgatgcctccggcc
ccggttatgtgtggtggtgactggccccttctgagagtcatgaaaggaatatttgatggt
ggattagataatattggcaggggtgctgtggatgaagaggaagaggatgcaggaggtgat
tggggtgaaaatcttgatgtggttgacgttgatggcttacagaatggggatgttactgaa
atttcggaatatggggaagtgactgaagaaaatgaagaggaagagggtggatgggacctt
gaagatttggaacttcctcctgaggtagacaccccaaaggtttctggcagtgctcgatct
atttttgtggcaccaactcctggtatgcctgtaagtcagatttggattcagaaatcatct
cttgctgctgaacatgcagcagttggtaattttgatacagcaatgcatttgctgagcagg
caacttggcataagaaactttgctcctttgaaatccatgtttcttgatcttcacgcaggc
agccatagccatattcgtgcattttcatctgcaccagtggtatccttggcgattgagagg
ggatggaatgagtctgctagtcctaatgtgaggtgtccacctgcccttgtgttcaatttt
tctcagttggatgagaagctgaaggctggttacaaggccactactgctgggaaatttact
gaggctcttcggctcttcctcagcattcttcacacaattccactgattgttgtggagtca
aggagggaagttgatgaagtcaaggagttaattattattgctaaggagtatgttctcggt
ctgcaaatagagattaaacgaagagaaatgaaagataatccagtgcgacaacaggagctt
gctgcatacttcacccactgcaaccttcaaatgcctcacctaagacttgctctgcaaaac
gcaatggttgtctgctccaaggcaaagaactgggctacagctggtaactttgccaggcga
ctactagaaacaagccccacgaatgagaatcaagcaaaggctgcaaggcaagtgcttcaa
gctgctgagaggaatatgacagatgccgcccagctgaactacgatttcagaaacccattt
gtgacatgtggggcaacttatgtgccgatttacagaggacagaaggatgtatcttgcccg
tattgcactgctcgctttgtgcctagccaggaagggcaattgtgcacggtgtgtgatctt
gcagtggtcggggcagatgcttcaggattgctatgttctccttcgcagatacgatga
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integrated database retrieval system
