Hibiscus syriacus (Rose-of-Sharon): 120202485
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Entry
120202485 CDS
T09559
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120202485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120202485
03012 Translation factors [BR:
hsyr03012
]
120202485
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120202485
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120202485
Translation factors [BR:
hsyr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120202485
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
OB_NTP_bind
R3H
HA2_C
Ank_2
Ank_5
HA2_N
AAA_19
nSTAND3
ATPase
Ank_3
Ank
AAA_22
ResIII
T2SSE
Rad17
ABC_tran
TsaE
Ank_4
AAA_11
Motif
Other DBs
NCBI-GeneID:
120202485
NCBI-ProteinID:
XP_039058826
LinkDB
All DBs
Position
Unknown
AA seq
1209 aa
AA seq
DB search
MGKKKTPIDETSVIRLSKILEKFKDAEDEAYTFESNLSNKEREFVHKESRKMGMKSKSKG
RGSQRQVFVYKIKEKGGGMSEKNLTNVAFSEGTRVVLQELFMNYPPEEGELEEKVIAKYS
GKNAKIRRKKDDIFSKSLMSAAEIAEKVKGLASKREKYPNLRQINEKRLKLPIAGFGDAI
TSAVESHQVILISGETGCGKTTQVPQFLLEYMWGRGEACKILCTQPRRISATSVSERISY
ERGESIGETVGYKIRLESKGGRHSSIVFCTNGVLLRVLVSNSRSKREDISDITHIIVDEI
HERDCFCDFILAIVRDMLPLHPHLRLVLMSATLDSERFSQYFGGCPIIRVPGFTHPVKSL
YLEDVLSILKSADDNHLISANASAQDEDPELTEEDKIALDEAINLAWSSDEFDQFIDLVS
VEGGSKVHNYQHSLTGLTPLMVFAAKGRVEEVCMLLSYGVDCNLISKDGKSALDWSEQEN
QQEAAELIKKHIESSRDNDGGQLLLDKYIASGNPEIIDNVLIEQLIRKICIDSNEGAILV
FLPGWEDINRMREKLLANPFFKDPSRFIIIPLHSMVPYADQKKVFTRPPSGCRKIVLSTN
VAESSITIDDVVYVIDSGRMKEKSYDPHSNVSTLQSSWVSKANAKQREGRAGRCQPGICY
HLFSKLRASSMLDFQVPEIKRMPIEELCLQVKLLDPNCKVDDFLQKTLDPPVSEAVRNAV
RVLQDIGAFTQDEELTELGEKLGYLPVHPLTCKMLFFAILMNCLGPALTLACASDFKDPF
VLPMRPNERQKAAAAKHELAALYGGQSDQLALIAAFECWKNAKRKGVEGRFCSQYFVSSS
TMNLLFGMRKQLQGELIRHGFIPDNVSSCSLNANNRGILHAVLVAGLYPMVGRVLPPKQG
KRIIIEAANGSKVRLNTRSINSKLSPRQSDYLIMYDEITRGDGGMYIRNCTVIGPLPLLF
LATEIAVAPMKGNVYGEDDGDDDDDDGGSDDVDACDTDGDEKSAVNKSSGKEEKVLSSPD
NSVMVVVDRWLSFKSTALDVAQIYCLRERLLEAILFMVMHPGKVLPPALGVSVYAIACLL
SYDGLSGIPEPAESVHSLTSRVRSTDINKHMPGMEDASPSPSRFLLSLVRRSPYDRVGFQ
KAAKVPEDGVVTNGDEPISCQQQSPVRPVGMRVDQAASQDPVSVASSSAGYDSCKRQRGK
RSMSRQCQW
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagaagaagacccccatagacgaaacctctgtaatccgattatccaagatactt
gagaagtttaaggacgcagaagatgaagcatatacctttgaatccaacctttcaaacaaa
gaacgagaatttgtgcacaaggaatcccggaaaatgggtatgaaatccaaaagtaaaggc
cgtggaagccagagacaagtctttgtctataaaatcaaagagaaaggcggcggcatgtca
gagaagaatctaactaatgtggcattttcagaggggacaagagtggttttgcaggaatta
tttatgaattatccacctgaggaaggggagcttgaagagaaggtaattgcaaaatatagc
ggaaaaaatgctaaaatacgaagaaagaaagatgatattttctcgaagtcattgatgagt
gctgcagagattgcagaaaaggttaaaggacttgcatctaagagagagaagtatccgaac
ttgagacagattaatgaaaagaggttaaagcttccaattgcagggtttggggatgccatt
acatctgcagtagaatctcaccaggttatcctcatttccggcgagactggctgtggcaag
acgacacaggttccacaatttcttttggagtatatgtggggaagaggtgaggcttgtaaa
atactgtgtactcagcctcggcgtatatcagctacatcagtgtctgagagaatttcttat
gaaagaggcgaaagcattggagaaactgttggatacaagattcgcttggaaagtaaaggt
ggtcgacactcatcaattgtcttctgcacgaatggggtattattgagagtgctggtttca
aacagtagatcaaagagagaagacatctctgacatcactcacattattgtggatgaaatt
catgaaagggactgcttctgcgatttcatattggcaattgtcagggacatgcttcctttg
catcctcatctacggctggtactaatgagtgccactcttgattctgaacggttttcgcaa
tattttggtggttgcccaattatccgtgttcctgggtttacacatcctgtaaagagtttg
tatttggaggatgtgctttctatcttgaaatctgcagatgataatcatcttatttcagct
aatgcaagtgcccaagatgaagacccagaattaacagaagaagataagattgcattagat
gaagctattaatttggcttggtcaagtgatgagtttgatcagtttatagatttggtttct
gttgaaggagggtcaaaggttcataattaccagcattccttgaccggattaacgccacta
atggtgtttgctgcaaaaggtagagtggaggaagtctgcatgctcctctcatatggtgta
gactgcaatctgatctccaaagacgggaagagtgctttggattggtctgagcaggaaaat
cagcaggaagctgctgaactgataaaaaaacatattgaaagttcccgagataatgacggg
gggcagctgttactcgacaagtatatagcatcaggtaatccagagatcatagataatgtt
cttattgagcagttgataagaaagatatgtatagattcaaatgaaggagctattcttgtt
ttccttcctgggtgggaggatattaatcgaatgagggagaaattacttgccaaccccttt
ttcaaagatccttccagatttattataatacctctgcattctatggttccctatgctgat
caaaagaaggtctttactcgtcctccttcgggctgccgcaaaattgtcctttcaaccaat
gttgccgaaagttccattacgattgatgatgttgtctatgttatagatagtggtagaatg
aaagagaaaagctatgatccacatagtaatgtatcaacccttcaatcttcatgggtttcc
aaagcaaatgccaagcagagagaaggacgggcaggccgttgtcagcctggaatatgttat
catcttttttcaaaacttcgcgcatcttctatgcttgactttcaagttccagaaataaag
agaatgccaattgaagagctctgtttacaggtgaaattgcttgacccgaattgtaaagta
gacgacttcttgcaaaagacattggaccctcctgtttctgaagctgtacgtaatgcagtt
agagtgcttcaagatattggggcgtttacgcaagatgaggaactgacagaacttggagag
aagcttggttatcttcctgttcatccattgacatgcaagatgcttttcttcgcaatattg
atgaattgccttggtccagctttgacattagcatgtgcttcagacttcaaggatccattt
gtccttcccatgcggccgaatgaaaggcagaaggctgctgctgccaagcatgagcttgca
gcactgtacggtggccaaagtgatcagctggcactcatagctgcttttgagtgctggaag
aatgcaaaaagaaagggtgtagaaggacgtttttgttcacaatacttcgtctcatcaagc
actatgaatttgctgtttggcatgcggaagcagcttcagggtgaactaatacggcacgga
tttattcctgataatgtctcgagctgtagtctaaatgcaaataaccgtggaatactccat
gcggtccttgtggctggtttgtatccaatggttgggagggtactcccaccaaaacagggt
aaacgaataattatagaggctgccaatggctctaaagttcggttaaacactcgttcaatt
aattcaaagttatcacccaggcaatccgattatttgattatgtatgatgaaataacccgt
ggggatgggggtatgtacataagaaactgtactgttattggaccacttccattgttattt
cttgcaacagagattgcagtggctcctatgaaaggcaatgtttatggtgaagatgatggc
gatgacgatgatgatgatggtggaagtgatgatgttgatgcgtgcgatactgatggagat
gaaaagtctgcagttaataagtccagtggaaaagaagaaaaggtcttgtcctctccagat
aattctgttatggtggtggttgatcggtggctatcattcaaatcaacagcacttgatgtt
gctcaaatctactgcctgagagagcgattattggaagctatcttattcatggtaatgcat
ccaggcaaagttcttcctcctgctcttggggtatctgtatatgcaatagcttgccttcta
tcttatgatgggttatcaggcatcccggagccagcagaatccgtacattctctgacttcg
agggtgcgttctactgatatcaataaacatatgccagggatggaagatgcgagtcctagt
ccgagtaggttccttttatcacttgtgagacgaagcccctatgaccgcgtaggtttccag
aaagctgctaaggtccctgaagatggggttgtaacaaatggagatgagccaataagttgc
cagcagcagtcacctgtaaggccagtcggaatgagggtagatcaagctgcatcacaagac
cctgtatcggttgcctctagttcagctgggtacgattcttgcaagcggcaacgagggaag
aggtctatgtcaaggcagtgtcaatggtaa
DBGET
integrated database retrieval system
