Hibiscus syriacus (Rose-of-Sharon): 120202742
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Entry
120202742 CDS
T09559
Name
(RefSeq) disease resistance protein RPV1-like
KO
K13126
polyadenylate-binding protein
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03015
mRNA surveillance pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120202742
09123 Folding, sorting and degradation
03018 RNA degradation
120202742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120202742
03041 Spliceosome [BR:
hsyr03041
]
120202742
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120202742
mRNA cycle factors
Stress granule specific factors
120202742
Spliceosome [BR:
hsyr03041
]
Complex C
Other components
Complex C specific factors
120202742
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
LRR_4
LRR_14
LRR_8
LRR_R13L1-DRL21
LRR_1
LRR_13
LRR_RPS2
LRR_EndoS
LRR_At5g56370
LRR_Zer-1
RRM_10
RRM_MARF1
RRM_YTH1
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
120202742
NCBI-ProteinID:
XP_039059056
LinkDB
All DBs
Position
Unknown
AA seq
593 aa
AA seq
DB search
MAVPTAVMLTASMVSLYVGDLHPVITDGTLFNAFNSFKGISSVRVCGDSSTGRSLCYGYV
NFSSLEDAHYAMEKMNHSSIHGKMIRVAWSLRDPDARKSGVGNVFVKNLSESIDSVGLQE
LFQRFGNVISCKAATFEDGKSKCYRFVQFESEESATAAIEKLDNNMIGDKQVFVGKFMKT
CDRILPSPDVNIQISFSNLIETPDFTIAPNLEILILEGCTRIVDVHPSVGVLTRLKLLNL
RSCTSLRNLPTKIGIESLETLILKDCRNLISLPSSIGGCKCLKTLDLSGFYKVENLPENL
QQVELLEELDLSETAIAKLPSFIFQLKNLKVLSLNRLKGPSSNIGPNLTSLFQVSSNIES
VPLMLHSLSGLRSLRELKLRNCNLHEGDIPSDISCLSSLEKLELGGNSFISIPVLGTGLS
RLQYLGLSNCRELKSFPKPGASRELFATPSKVCNAVDWTQFSGLHCYRLVENINALTLLK
FHLKRVAYLKKFLMLLYLEVKYQNGSAIKQLTLQSRYHCLTIFRMMVNGSELLSAVFLST
MTLQGMRNSHVKLLSIIRIPEKMVSLHGRMYSNNGDHAWLHYKNNMIAQTMQV
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggcggttccaacggcggtgatgttaacggcgtcgatggtttcgttgtacgtcggggat
ttgcatcccgttatcactgacgggacactcttcaatgctttcaattcgttcaaaggaata
tcctctgtccgtgtttgtggagattcatccacaggaaggtctctttgttatggctatgtt
aacttcagttctctcgaggatgcacattatgcaatggagaagatgaatcacagttcgatt
catgggaaaatgattagggtggcatggtcacttcgagatcctgatgcaagaaagagtgga
gttggaaacgtgtttgtcaagaatctaagtgaatcaatcgatagtgtggggttgcaagag
ttgtttcagaggtttgggaatgtaatatcctgcaaagctgcaacatttgaggatgggaaa
agcaaatgttatagatttgttcaatttgaatctgaagaatctgcaactgctgctattgag
aagcttgataacaacatgattggtgataaacaagtatttgttgggaaatttatgaaaacg
tgtgacaggattttgccaagtcctgatgtaaatatacaaatctccttctcaaatctgatc
gagacaccggactttacaatagccccaaatctggaaattttgatattggaaggttgtaca
agaatagtagatgtccatccatcagtcggagttcttacgaggcttaaacttctgaattta
agaagctgcacaagtcttaggaatcttccaaccaaaattggaatagaatctcttgaaaca
ttaatcctaaaagattgtagaaaccttattagtctcccaagcagcattggtgggtgtaaa
tgtctaaaaactcttgatctttctggcttctataaagttgaaaatttgccagagaatttg
cagcaagtagagttgttggaagagctcgacttaagtgaaacagccatagcaaaactacca
tccttcatttttcaacttaaaaatcttaaagttttgtctttgaataggctcaagggacca
tcatctaatataggaccaaatctaacttctcttttccaggtatcatctaatatagagtct
gtgcctctgatgttacattcattgtcaggtttgagatcattaagagagctgaaactaagg
aactgcaatttacatgaaggagatattcctagtgatatttcttgtttatcctctctggaa
aaacttgagcttggcggcaacagtttcatcagcatacctgtgcttggtactggactttcc
aggcttcaatatcttggattgtcaaattgcagggagcttaaatcgtttcctaaacctggt
gcttctcgagaactatttgcaactccatcaaaggtttgcaacgcagtggattggacacag
ttttctggccttcactgctacagattggttgagaatatcaatgcattaacattgctgaaa
ttccatcttaagcgagttgcatatttaaaaaaatttttgatgctgttatacctggaggtg
aaatatcaaaatggttcagccataaaacagttgactcttcaatcaagataccactgccta
acaatattcagaatgatggtcaatggatcggagttgctttctgctgtatttttgtcaacg
atgacgcttcaaggaatgaggaactcacatgtgaagttgttatccatcataagaattcca
gaaaagatggtttcactacatggccgaatgtactcaaacaatggggaccatgcatggctt
cactacaaaaataatatgatcgctcaaacaatgcaagtctag
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