Hibiscus syriacus (Rose-of-Sharon): 120203258
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Entry
120203258 CDS
T09559
Name
(RefSeq) uncharacterized protein LOC120203258
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120203258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsyr03000
]
120203258
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120203258
04121 Ubiquitin system [BR:
hsyr04121
]
120203258
Enzymes [BR:
hsyr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120203258
Transcription factors [BR:
hsyr03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
120203258
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120203258
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120203258
Ubiquitin system [BR:
hsyr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120203258
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-UDP
Nab2-like_zf-CCCH_
Rtf2
Motif
Other DBs
NCBI-GeneID:
120203258
NCBI-ProteinID:
XP_039059516
LinkDB
All DBs
Position
Unknown
AA seq
1039 aa
AA seq
DB search
MSDVGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAEKDEAEGRCPACRTAY
DKEKIVRTASNCERLVAEINFERKMKSQKAKTKSSEGRKQLSSVRVIQRNLVYVVGLPLN
LADEDFLQSREYFGQYGKVLKASLSRTAAGSIQQFPNNTCSVYITYSKEEEAIRCIQSVH
VFVLDGRPLKACFGTTKYCHAWLRNMPCSNPDCLYLHEIGSQEDSFTKDEIISACSRVQQ
ITGTTNNMQRRAGNMLPPPVDDYCPNSSSTAKSISKSAPNNTISSCQKDSPSNGSPGRSI
ALPAGASWGTRALNQPQSACLSYSNGPSKQKSDTISCAPPFLSAVTNINRSCTLHDDVVK
KPSEEIHAMHMKGKSDLLKPLRHNGGLDSRTTALEKPTSPEGVPASKSLSRRISCPPTSI
YNDQGTNIPSTVTSSIFGHSEKSFITSNVKVGSILSTDEKIQSLCSNVSSLTLDRITSSG
HSSVIRPSSSASDHGSSSSSSSHGLQQCYTENYREHLNSATAGRSVTSPNSVSVSKEKYD
WGTDTQTRAVVNTSSEVEEDVLSFDNQRVKDTEVISRPNYMPNSPISFHLSNHSWPHSFQ
YGDSFGLVNLNADTAFVDNKVSDSLQFHGSGVSSLSNGYPEKYISSSIGSGITTEGYVLP
SNQGEVKQMGRFLGNDEDIVSKGETGKNSIISNMLSLDFDTWDESLRSPQNLAKLLGDTD
KQQSSPLKFSSPGKALNNNQSRFSFARHEDSKYHPFDIESSCGVFGQMPQNQLSSQDFAE
SRDLYLNKFGSSNGLPPGNFDAYNNFSGSPSVFSSNKLSVSRARVSAPPGFSVPSRAPPP
GFSSNGRVDHSFDTSGYLDTLSLLRNSYQAPASSGIGGVGDIEVMDPAILAVGKGRLQGG
LNNSGLDMQSNFPPQLGLYENDARVQLLRQRSLSPHQNLRYDVGDRFSSRNGSYGVSSRV
MDQSQVNNISPYARLYLQQSRNSHMSNGPWDGWNEVQGGDNVGMAESLRNERLGFNKFYS
GFEDSRYKMGDLYNRTFWM
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgtcggagaaaagacctgccccctttgtgcggaggagatggatttgactgat
cagcaactgaagccttgcaaatgtggttacgagatatgtgtttggtgttggcatcacata
atggaaatggctgagaaggatgaggctgagggaaggtgcccagcttgtcgtactgcttat
gataaagaaaaaattgtacggacagcttctaactgtgagaggttggttgctgaaattaat
tttgagagaaaaatgaagtcacaaaaggcaaagactaaatcatctgaaggaaggaagcaa
ctgagcagtgtgcgagtcattcaaaggaatcttgtttacgtagtcgggttgccacttaat
ctggcagatgaagattttctccaaagtcgagaatattttggtcaatatggaaaagttcta
aaagcatctttgtctaggacagcagctggttccattcagcaatttccaaacaatacatgt
agtgtatatattacttactcaaaagaagaggaagcaattcgttgtatccaatctgtacat
gtatttgtcttggatggtagaccattaaaggcatgctttggtacaacaaagtactgccat
gcatggctgagaaatatgccttgcagcaatcctgattgtctatatttgcatgagattggt
tctcaagaggatagtttcaccaaagatgagatcatatctgcatgctcaagggttcaacaa
ataactggtacaacaaacaatatgcaacggcgtgctgggaatatgttacctcccccagtg
gatgattattgccccaatagttcttctacagcaaaatccatttctaaaagtgctccaaat
aatacaatatcaagctgtcaaaaagattctccttcaaatggaagccctggtagatctatt
gctcttcctgctggagcatcatggggaactcgtgctttaaaccagccacaatcagcctgt
ttatcatactcaaatggaccttctaagcagaaatctgatacaattagctgcgcaccacca
tttttatctgcagtaacgaacataaatcggtcttgtacattacatgatgatgttgtaaag
aaaccatctgaggagatccatgctatgcatatgaagggtaaatctgatttgttaaagccc
ttgagacataatggtggtttagatagtcgaactactgcactagagaagcctacttcacct
gaaggagttcctgcctctaaatcattgagcaggcggatatcttgtcccccgacgtccata
tataatgaccagggcactaatataccatcaactgttacaagctccatctttggccactct
gagaagtcttttattacatccaatgtgaaagtagggagtattttgtctactgatgagaag
atacagagcttatgctctaatgtttcatcattgaccttagataggattacctcaagtgga
cattccagtgttattagacctagcagttcagcctccgaccatggatcaagcagctcttcc
agtagtcatgggttacaacagtgttatactgagaactatcgggaacatttaaattcagca
accgctgggagatctgtgacatcccccaatagtgtgtctgtttcaaaagagaagtacgat
tggggaactgatacacaaactcgagcagtggtgaatacaagttctgaagttgaagaggat
gtattgtcttttgataatcaaagagtcaaggatacagaagttattagccggccaaattat
atgcctaattcaccaatttcatttcatttatcgaatcattcttggccccattcttttcaa
tacggtgattcttttggccttgttaatttgaatgctgatacagcctttgtagataataaa
gtcagtgacagtttacaatttcatggatccggtgtttcgtctttatctaatgggtaccct
gagaagtacataagtagtagtattggttctggtattacaacagaaggctatgttctgcct
tcaaatcaaggggaagtgaaacagatgggaagattccttggtaatgatgaggacattgtt
tccaaaggtgaaacaggaaagaacagcataatttcaaacatgttgtcgctagattttgat
acatgggacgagtctctaagatcgcctcagaacttggctaaattgttgggtgacactgac
aagcagcagtctagtcctctcaaattttctagtccagggaaggctttgaataacaatcag
tccagattctcatttgcaagacatgaagattctaaatatcatccttttgatattgagtcc
tcatgtggtgtttttggtcaaatgccacagaaccagctttcaagccaagattttgctgaa
agcagggatctctatctgaataagtttggaagttctaatgggttacctccaggtaacttt
gatgcatacaacaatttttcaggcagcccttcagttttctcttctaataagctctctgtt
tcaagagctcgagtgtcagcaccacctggattctctgttcccagcagggctccccctccc
ggcttttcctctaatgggagagtagaccacagttttgacacatcaggatacttggacact
ttgtccctgttaagaaactcttatcaggctccagcaagtagtggtattggtggtgttgga
gatatagaagttatggatccagcaatattggcagttggtaagggtagacttcagggaggg
ctcaacaattcaggcttagatatgcaatcaaattttcctccacagttgggtctctacgaa
aatgacgccagagttcaactattgaggcagagatctctttctcctcatcagaacctaaga
tatgatgttggggatagattttcttctcgtaatggctcttacggagtttcttctagggta
atggatcaatcacaagtgaacaacatatccccatatgcacggttgtatctccaacagtcg
aggaattcacatatgtcaaacggtccttgggatggttggaatgaagtccagggtggagac
aatgttggcatggctgagtcgctcagaaacgagagattgggatttaacaagttctattct
ggttttgaagattcaaggtacaagatgggtgatctatataacagaacattctggatgtga
DBGET
integrated database retrieval system
