Hibiscus syriacus (Rose-of-Sharon): 120203918
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Entry
120203918 CDS
T09559
Name
(RefSeq) dicer-like protein 4
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hsyr03036
]
120203918
Chromosome and associated proteins [BR:
hsyr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120203918
microRNA pathway
RISC loading complex
120203918
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
Helicase_C
DEAD
ResIII
DND1_DSRM
dsrm
PAZ
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120203918
NCBI-ProteinID:
XP_039059994
LinkDB
All DBs
Position
Unknown
AA seq
1572 aa
AA seq
DB search
MEENIIVYLETGCGKTHIAVLLIYELGHLIRKPQKRICIFLAPTVALVQQQARVIEDSLD
FKVGTFCGNCRHLKNHHDWEKEIEQYEVLVMTPQILLRSLYHCFIRMDLIALLIFDECHH
AQSKSNHPYAEIMKVFYDKATAPMLPRIFGMTASPVVGKDASSQVNLPKSINSLENLLDA
KVYSVGDKEELESFVATPVVKVYDYGPVIFGPSSSYIIYCHKLEDIKRQCILLIRKNGDF
QSAKNTKKLLNRMHDNIIFCLENLGLWGALQACRLLCNNSERNELIEDEGILSDDSVCDR
YLAQAADVFALDCKRDGSAHDLSDVEILKEPFFSKKLLRLVGILATFSVQRNMKCIIFVN
RIVTARSLSYILQSLKFLSSWKCHFLLGVHSGLKSISRKTMKNILEKFRTGELNLLVATK
VGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPVSEYAFLVNSANERELNLINNFKK
DEDRMIMEITFRTSTDVSIALEDKMYKVDSSGAFISSGYSISLLHHYCSKLPHDEYFHPK
PSFYYFDDTGGTICNIILPSNAPINQISSTPQSSVNAAKKDACLKAIEELHKLGALTDHL
LPLQNSVPEEKAVLVDSDSGCSEEDSRSELHEMLVPAVLKEPWTNLENYVLHSYYIKFIP
DPEDRCYKEFALFVKSPLPKEAERMELDLHLARRRSVMTKLVPSRVAEFKREEIMEALHF
QEMFLKVILDRSKLLSEFVPLGNNDFLSSSSSTFYLLLPVILSNCENKVTVDWGSVQRCL
SSPLFKTPVEAAKNENFSSDVCLQLVNGCRSIRDIENSLVYATHKVAFYFITNIVSEKNG
YSPYRDSGTVNHVENLKMSDIHLKYPEQPLLRAKPLFKLHNLLHNRKPEDSESHELEEYF
IDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHVFSGSFPEGAEVSAIR
VLEALTTEKCQERFSLERLESLGDAFLKFAVGRHLFLLHDSLDEGQLTRRRSNAVNNSNL
FKLATRRNLQVYIRDQPFHPCQFFALGHPCPVICTKETKETIHSQNSCQVDCANTEVRCS
RNHHWLHKKTISDVVEALVGAFIVDRGFQAASAFLRWIGIRVDFQGSQVNSICSASKRFM
SLSSQVDTEALENLLGYRFLHKGLLFQAIVHPSYNRHGGGCFQRLEFLGDAVLDYLITSY
LFSLYPKLKPGQLTDLRSVSVNNKSFANVAVERCLHKFLISDSCPLNEAIEKYVAFFTSS
PNRGLFEGPKCPKALGDLVESCFGAILLDTGFDLTRVWKIMLSLLDPIKSLSSLQLNPVR
EVTELCQSHNWELIFLPSKSGKFFSVDASAGDVSVSISAIYTNQKDAIRTAAHQLYEKLK
DLGYAPKSISLEEALKGSIKAEAKLIGFDETPINVAVPDIAAFGNMKLQESLDDDCNPET
HSINKATSSPGSPFTSPSSRPLHSSEAKAGRSASSSCGIASQSKGESHAHTARSQLYEIC
AINCWKPPLFECCKEEGPSHLRSFTYRVIIEIEEASDMILECFSSPRTTKKAAAEHAAEG
ALWYLKHEGYLQ
NT seq
4719 nt
NT seq
+upstream
nt +downstream
nt
atggaagagaacatcattgtatacttggagactggctgtgggaagactcatattgctgtt
ctgcttatttatgagcttggtcatttgatacggaaacctcagaagaggatatgtattttt
cttgctcctactgtggctcttgttcagcagcaagcacgtgttatagaagattctcttgat
ttcaaggttgggactttttgtggtaactgcagacacttgaagaaccatcatgattgggaa
aaagagatcgaacagtatgaggttctggttatgacacctcaaatattacttcgtagttta
tatcactgtttcatcaggatggacttaatcgctcttctgatatttgatgagtgtcatcat
gctcaaagtaaaagcaatcatccatatgcagaaataatgaaagttttttatgataaagct
actgcaccaatgcttcctcgtatatttggcatgacagcctctcccgttgttggtaaagat
gcttctagtcaagtaaatttaccaaaaagcatcaacagtcttgaaaacttgcttgatgcg
aaggtctattcagttggagacaaggaggaattagaaagctttgtagcaactcctgtcgtt
aaagtatatgattacggtcctgtcatttttggtccttctagttcctacattatttattgt
cacaaacttgaggacattaagcgccagtgcatattacttatccggaagaatggtgatttt
caatctgccaagaacacaaaaaagctgctcaacagaatgcatgataacataattttttgc
ttggaaaatcttggcctctggggagcattacaagcttgccgacttctttgtaataactcc
gagcgaaatgaattgatagaagatgaaggaattttaagtgatgactctgtatgtgatcga
tatcttgctcaggctgctgatgtttttgctttggattgtaagagagatggatctgcacat
gatttatctgatgtggagattttgaaggagccatttttctcaaaaaagctgttacgcctc
gttggaatccttgccaccttcagcgtacagcgaaatatgaaatgtatcatttttgttaat
agaattgttactgcaagatccttgtcatacatactgcaaagccttaagttcctatcatct
tggaagtgccattttctcttgggagtccactctggacttaaaagtatctcaagaaagaca
atgaaaaacattcttgagaagttcagaactggagagttgaatcttctggttgcaactaaa
gttggtgaagaaggacttgacatccagacatgctgcctcgtgatacgttttgaccttcca
gaaactgttgcaagttttatccaatcaagaggtcgtgcaagaatgcctgtgtctgagtat
gcatttctagtaaacagtgcgaatgagagggaactaaatttgattaacaattttaagaaa
gatgaagatcgtatgatcatggaaattacattcagaacatctactgatgtttctattgct
cttgaggataaaatgtataaagttgattcatctggtgctttcattagttcaggatatagt
atctctctacttcatcattactgctcaaaactgccccatgacgagtactttcaccccaag
ccaagcttttattattttgatgatactggaggaacaatctgcaatataattttaccttcc
aatgctccaataaatcaaatttccagtacacctcaatcttcagttaatgctgccaaaaag
gatgcttgtctaaaagccattgaagaactgcataaattgggagccttgactgatcacctc
ttgccattgcaaaacagtgttcctgaggagaaagcagtgctggtggattctgattcaggg
tgctctgaagaggattcacgtagtgaactacatgagatgcttgtgcctgctgtgcttaaa
gaaccatggactaacttggaaaactatgtccttcattcgtactatataaaatttattccg
gatcctgaggataggtgctacaaagagtttgcactttttgtcaagtctcctcttcctaaa
gaagctgagagaatggagcttgatcttcacctagctcgccgtaggtcggtgatgacaaag
cttgtcccatcacgagtagcagaatttaagagagaagagatcatggaagcactgcatttt
caagaaatgttcttgaaggtcatccttgatagatcaaaactcctttccgaatttgttcct
ttaggaaacaacgactttctttcatcaagctcctcaacattctacttgttactccctgtt
attctttccaattgtgagaataaagtgacagtggactgggggagtgtgcaaagatgtttg
tcatctccactttttaagactcctgtagaagctgcaaagaatgaaaatttctcttcagat
gtttgcttgcaacttgtaaatggttgtaggagtataagagacattgagaatagtttggtg
tatgctacacacaaggtggccttttactttattactaatattgtcagtgaaaaaaatggt
tacagcccatatagagattccggcactgtaaaccatgtggagaacttaaaaatgtctgac
attcatcttaagtaccctgaacaacctcttctgcgtgcaaaaccactttttaaattgcac
aatttgctacacaaccgaaagccagaggattcagaatcgcatgaactggaagaatacttc
attgatttgcctcctgagctttgtcagttgaaaataataggcttctccaaagatattggg
agttcactttctttgttaccatcaattatgcatcgcctagagaacttgcttgtggctatt
gaattgaagcatgttttttctggttcatttcctgagggagctgaagtttcagccataagg
gtcctagaagcactcactacagagaagtgccaagaacgtttctctcttgagaggcttgaa
tcgcttggtgatgccttcctcaagtttgctgtaggccgccatctttttcttttacatgat
tcactcgatgaagggcaattgactaggagaaggtctaatgctgtaaacaattctaatttg
ttcaagctagccacaagacgcaatttgcaggtttacatacgcgatcaacctttccatcct
tgccagttctttgctctgggccatccctgcccggtaatttgtacaaaagaaactaaagaa
actattcattcacaaaatagttgtcaagtagattgcgcaaatactgaagttagatgcagt
agaaatcaccattggctacataagaaaacaatttctgatgtggttgaggctcttgtagga
gcatttatagttgataggggcttccaagctgcaagcgcatttcttagatggattggcata
cgagtggacttccaaggttctcaagttaacagtatttgctctgcaagcaagagattcatg
tcactttcctcccaagtggatactgaagctcttgaaaatttgttgggttaccggtttctt
cacaagggtctcctctttcaggcgattgtgcacccttcttataataggcatggtggagga
tgcttccagagattggaatttcttggagatgctgtcttggattatttaatcacgtcatat
ctgttttcactgtatccaaagttgaagcctggtcagttgactgatttgagatcagtgtca
gttaacaacaagtcctttgccaatgttgcggtggagagatgtttacacaaatttcttatc
tccgactcttgtcccctcaacgaggccatagaaaaatatgttgccttcttcacgtcctca
ccaaacaggggattgtttgaagggccaaaatgtcctaaggctcttggtgacttggtagag
tcctgtttcggtgctattctccttgatacagggtttgacttgacccgtgtttggaaaata
atgctatcccttttggatccaatcaagagcctttctagtttgcagctcaatcctgtcagg
gaagtaacggaactttgccagtctcataactgggaattgatctttctaccatcaaaaagt
ggcaaatttttttcagtggatgcatctgccggagatgtttctgtatccatttctgcaatc
tacactaaccaaaaagatgccatcagaactgccgcgcatcagctatacgaaaagttaaag
gatctaggatatgcacccaaatcaatttccttagaggaagctttaaagggaagcatcaaa
gctgaagccaagctgattggatttgatgaaacaccaattaatgtcgccgttcctgacatc
gctgcatttggaaacatgaaattgcaagaatctcttgacgatgattgcaacccagaaact
cattccattaataaggcaacgtcctctcccggttcacctttcacctcacctagtagcaga
cctctgcattcttctgaagcaaaagcaggacgttcagcatcaagtagttgtgggattgcc
tcgcagtccaaaggtgaatcacatgctcatactgcaagatcacagttatatgaaatctgt
gccatcaattgttggaaaccccctttgttcgaatgttgtaaagaggaaggaccaagccat
ttgagatcgttcacttacagggtaattatagaaatcgaagaagcctcggacatgatcttg
gagtgcttcagcagtcctcggaccacgaagaaggcagccgctgagcatgcggcagaaggt
gcattgtggtacctaaaacatgaagggtacttacaataa
DBGET
integrated database retrieval system
