Hibiscus syriacus (Rose-of-Sharon): 120204289
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Entry
120204289 CDS
T09559
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120204289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsyr03041
]
120204289
03009 Ribosome biogenesis [BR:
hsyr03009
]
120204289
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120204289
Spliceosome [BR:
hsyr03041
]
Complex A
U1 snRNP components
U1 related factors
120204289
Complex B
120204289
Ribosome biogenesis [BR:
hsyr03009
]
Eukaryotic type
Pre-60S particles
Helicases
120204289
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
Motif
Other DBs
NCBI-GeneID:
120204289
NCBI-ProteinID:
XP_039060323
LinkDB
All DBs
Position
Unknown
AA seq
1162 aa
AA seq
DB search
MTSAEAGAATLGPRYAPDDPTLPKSWKGLIDGSTGLMYYWNPETNVTQYERPTVKPPSLP
LGPPPVSTPKLAPIPAAHSAQPNGAAAQMGQIQVPQGAQQQGQQMSQLTQQQGQIMGQQP
GSMAAQVSDQHGSQQPGPQMGQHGQFIAQKNIPQTMQHPNQQMMNQIGQQTMQHQNSQMG
QPRGHQYAHQHLQYMGHQQSVLPQGQQSSQQLAPHGAQPQGQQYPNQEDYKAAGPRKEDV
DFQLGNQTGFSPAQFQQMGNSSQNQSAGTNSVPMPQPGYNLGQAQQFTGSSINMPPPTSI
GQSQQTGTDLVQRQQGHRFQNQMGPSMIQTSMPPPALNTSYEDKLHGRSGNDYYFNSGKD
GPMMGPRQPLLSAIPRETWASGLPPQNAIPGHGGGFNPIGGHGVHNMYGHTGPPFPNNSL
TRPPFVPSVDTSNMSPAEAYCKQHEVTATGDSVPAPFIRFEDTGFPPEILREIHSAGFSS
PTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFMLLRQRRNNSLKGPTVLVLAPTR
ELATQIQVEVIKFGQSSRVSSTCLYGGAPKANQLKELDRGADIVVATPGRLNDILEMKKI
EFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAADLLVNP
VQVNIGSVDELAANKSITQYVEVVPQMEKERRLGQILQAQERGSKVIIFCSTKRLCDQLA
RSLGRNFGAVAFHGDKSQTERDWVLSQFRSGKSPILVATDVAARGLDIKDIRVVINFDFP
TGIEDYVHRIGRTGRAGATGVSFTFFSEQDWKYAPDLIQVLERANQHVPPEVREIASHGG
PGFGKYQGGMNRFNSGGSGGRWDNGGRGGMRDGGFGGRGGMRDGGFGGRGGTRDGGFGGR
GDIRDGGFGGPGGRGDPFSGRGNRGRGFGGPAGGQGGWGRNERSLHDQNNSFDGRGRGRY
RGRGRFDNRRGTADRSGGRSYSRSPDMVRTWRHSRSRSRSRSWSRSRSRSRSWSRGRSYS
RSPRRSYSCSPGRGRSHSHGRRSRSRSLSYDRYEKPNEQNAERKGVVKRAFDSPVSYEQN
LEQKDVAKRAFDSPPSHEQNTEQKDVAKQAFDSPPVSTMSPGGQGTSVFENSSVQPLQTA
ESAEVPRGEVGAGQVHQSMTET
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgacgagtgcagaagcgggggcggcgactcttggcccacgatatgcgcctgatgatcct
actcttccgaaatcttggaaggggctgattgatggaagcactggccttatgtattactgg
aatcctgagactaatgttacccagtatgagaggcctactgttaagcctccatccttgcca
cttggccctcctccagtttccacacctaagctagctccaatcccggctgcccactcagca
cagcctaatggcgcggcagcacagatgggccaaatacaagttccccagggtgcgcaacag
cagggacagcaaatgagccaattaactcaacaacaaggacaaataatggggcagcaaccg
ggttcaatggcagcacaggtttctgatcagcatgggtcacaacaaccaggtcctcaaatg
ggacagcatgggcagtttattgcacagaagaatataccacaaacaatgcagcatccaaat
cagcaaatgatgaatcaaataggacagcagacgatgcaacaccaaaactcacaaatggga
caaccgcgaggacatcaatatgcacatcagcatttgcagtatatgggacatcaacaaagt
gtgcttccacaggggcaacaaagttctcagcagttggctcctcatggtgctcaaccccag
ggtcagcaatatccaaatcaagaagattataaagcagcaggtcccagaaaagaagatgtt
gattttcagctagggaaccaaactggattttctcctgctcaatttcaacagatgggcaat
tcttctcagaatcagtctgctggaactaattcagttccgatgccacagccaggttataat
ttgggtcaagcacagcagtttactggctcctccatcaatatgcctccaccaacctctatt
ggtcagtcacagcaaactggaacagatttggttcagcggcaacagggtcataggtttcag
aatcagatgggcccatccatgatacagactagtatgcctcctcctgccttaaacactagt
tatgaagataaactacatggcagatctggaaatgattactacttcaatagtggcaaagat
gggccaatgatgggtccacggcagcccttactttcagctatacccagagagacgtgggcg
agtggtctgccacctcaaaatgccatacctggtcatggtgggggattcaatcctatcgga
ggtcatggagtgcataacatgtatggtcatactggtccaccttttccaaataattccttg
acgaggcccccatttgttccatccgtggatactagtaatatgtctccagctgaagcatac
tgcaaacaacatgaagtcacggcaacgggagacagtgttccggcaccattcattaggttt
gaagatactggtttccctccagagatactgagagagattcattctgctgggttttcatcc
cccaccccaatacaagcacagacatggcccattgcactacaaagtcgggacattgtggca
attgccaaaactggttctggtaaaacattgggctacttgattcccgctttcatgcttttg
aggcagcggcgcaacaactctctgaagggcccaacagtgttggttttggctccaacccgg
gagctcgctacacaaatacaagtagaggtcatcaaatttggccaatcttcaagagtatct
tccacgtgtttgtatggtggagctccgaaggctaatcagttgaaagagttagatcgagga
gccgatattgttgtggcaactcctggtcggctgaatgacatccttgaaatgaaaaaaatt
gagtttgggcaggtgtcactccttgttcttgatgaagcagatcgaatgcttgacatgggt
tttgagccccaaatccgcaagattgttaatgagatacctcctcgcagacaaaccctgatg
tacacagcaacgtggcccaaagaagttagaaaaatagcagctgaccttcttgtcaatcct
gtccaggtgaacattggcagtgttgatgagcttgctgccaataagtctatcacccagtat
gttgaggttgtcccccagatggaaaaagagaggcgcctggggcagattctccaagctcaa
gaacgtggttcaaaggttattattttttgctccactaagaggttgtgtgaccagctcgct
cgtagtcttggacgcaactttggagctgttgcatttcatggggataaatctcagaccgaa
agggactgggtcttgagtcagttccgaagtgggaaatccccaatattagttgccactgat
gttgctgcccgtgggcttgacatcaaagatataagggtggttatcaattttgatttccct
actggcattgaggattatgttcaccgaattggaagaactggaagagctggcgcaactgga
gtgtctttcacctttttctctgagcaggactggaagtatgcccccgacttgattcaagtt
ctggagagagcaaaccagcatgtgcctcctgaggtgcgagagatagcttcgcatggtggg
cctggttttgggaagtatcaaggtggaatgaatagatttaattctggtggtagtggtggg
cgctgggacaatggaggccgtggtggtatgagggatggtggctttggtggacgtggtgga
atgagggatggtggcttcggtggacgcggtggtacaagagatggtggttttggtgggcgc
ggcgatattagggatggtggctttggtggccctggaggtagaggtgacccattttctgga
cgtggaaacagaggacgcggatttggtggtcctgctggtggtcaaggaggttggggcagg
aatgaaagaagcctgcatgatcaaaataatagttttgatgggagaggacgtggtcgttat
cgtggacggggacggtttgataacagaagaggtactgctgataggagtggtggcaggagc
tatagccgaagtcctgatatggttcggacatggcgccatagccgtagtcgaagccgcagt
cgtagttggagtaggagccgaagtagaagcaggagctggtcacgtggccgtagctacagc
cgtagccctcgtcgaagctacagctgtagtcctggtcgaggcagaagccatagccatggt
cgccgcagtcgaagccgtagcctcagctatgacagatatgagaagccaaacgaacagaat
gccgagcggaagggtgttgtaaagcgggcatttgactctcctgtctcctacgaacagaac
ttagagcagaaggatgttgcaaagcgagcatttgattctcctccttcccacgaacagaac
actgagcagaaggatgttgcaaagcaagcatttgattctccccctgtttccaccatgtct
cctggcggacagggcacttcagtgtttgaaaatagttctgtacaaccattacaaactgct
gaaagtgctgaggtgcctcgaggagaagtgggtgcaggccaagtgcatcagtcgatgacc
gagacctaa
DBGET
integrated database retrieval system
