Hibiscus syriacus (Rose-of-Sharon): 120204330
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Entry
120204330 CDS
T09559
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120204330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120204330
03041 Spliceosome [BR:
hsyr03041
]
120204330
03009 Ribosome biogenesis [BR:
hsyr03009
]
120204330
03016 Transfer RNA biogenesis [BR:
hsyr03016
]
120204330
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120204330
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
120204330
Spliceosome [BR:
hsyr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120204330
Complex C
U4/U6.U5 tri-SnRNP related factors
120204330
Ribosome biogenesis [BR:
hsyr03009
]
Eukaryotic type
Pre-60S particles
Helicases
120204330
Transfer RNA biogenesis [BR:
hsyr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
120204330
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
Zot
ATPase_2
DUF7491
nSTAND3
Motif
Other DBs
NCBI-GeneID:
120204330
NCBI-ProteinID:
XP_039060362
LinkDB
All DBs
Position
Unknown
AA seq
1003 aa
AA seq
DB search
MGTLKRKSGDVAFSESPPPLQKKIHHGGDALALTEEAAGCVHDVSYPEGYVPSASTANLP
PDSKPAKEFPFALDPFQSEAIACLNNGESVLVSAHTSAGKTVVALYAIAMSLKNNQRVIY
TSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEIVREVA
WVVFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHKQPCHIV
YTDYRPTPLQHYIFPAGGDGLFLVVDEKGKFREDSFQKALNALVPTSESDKKRNNGKSQK
GLVMGKVSEQSDIFKLVKMIIQRQYDPVIIFSFSKRECEFLAMQMAKMDLNDDDEKGNVE
TIFWSAMDMLSEDDKKLPQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFA
TETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDARGICILMVDE
RMEPSTAKMMLKGNADSLNSAFHLSYNMLLNQLRCEDADPESMLRNSFYQFQADRAIPDL
EKQVKALEEERESMIIEEEDSLKNYYNLIQQYKSLKNDIRDIVFSPKYCLPYMKSGRPIC
IKCIDDETSPSFSIEDHVTWGVLMDFHRVKSIIEDDANKRPEDASYALDILTRCNVSKDG
LGKKTIKIVPLKEPGEPLVVSVPLSQVTILSSARLTIPKDLLPIEARENALKKLSEFISL
FFSFYYCYFXYYSYFQLLNDFSFFQIQSNSYKKAVRRLEALESLFEKHEIAKSPLIEQKL
KLLNRKEELTSKIRSIKKTMRSSTVLAFKDELKARKRVLRRLGYITSDDVVELKGKVACE
ISSADELTLTELMFSGVLKDIKAEEMVSLLSCFVWQEKLQDAAKPREELELLFTQLQDTA
RRMAKVQLECKVQIDVESFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRR
LEEVLQQLILAAKSIGERDLESKFEEAVSKIKRDIVFAASLYL
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgggaactttgaagaggaagtcaggcgatgtggcattctctgagtctcctccgccgctg
cagaagaagatacatcacggtggagacgccttggcgttgacggaggaagccgccggatgt
gttcatgatgtttcatatcccgaaggttatgttccttctgcttccaccgcaaaccttcca
cctgactctaaacccgccaaggagtttcctttcgcgcttgacccctttcagtctgaagct
atcgcttgcctcaataatggcgaatctgtcctggtatcggcacatacatcagcaggaaaa
actgtggtagctttatatgcaattgccatgtctttgaagaataaccaacgtgttatatat
acttcacctattaaggctctcagcaaccagaagtatagggagtttaaagaggagttttct
gatgttggtttgatgactggagatgttaccatcgaccctaatgcttcgtgcttggtgatg
accacggaaatctggcgtagtatgcagtataaagggtccgagattgttcgtgaggtggca
tgggttgtttttgatgaagtgcattacatgcgtgatcgtgagaggggtgttgtctgggaa
gagagtattgttatggcgccaaagaattctcggtttgtatttctttcagcaactgtgcct
aatgcgaaggaatttgctgactgggtagcaaaggttcacaagcaaccatgtcacattgtt
tacactgattatcggccaaccccacttcagcattatattttccctgctggaggtgatggt
ctatttttggtggtagatgagaaagggaaatttcgtgaggatagttttcagaaagcttta
aatgcgctagttcctacaagtgaaagtgacaagaaaagaaataatggcaagtcacagaag
ggtttagtgatgggaaaagtcagtgaacaaagtgacatcttcaagttggtgaaaatgatc
attcagcgtcaatacgaccctgtgataattttcagctttagcaaaagggaatgcgaattt
ctagcaatgcagatggcaaagatggatttaaatgatgatgatgagaaaggaaatgtagaa
acaatcttctggagtgccatggatatgctttctgaagatgataagaagctacctcaggtg
tcaaacatattaccgcttttgaaacgtggaattggtgtgcatcactctggtttgcttccc
attctaaaggaagtgattgagatattatttcaggaaggactgattaagtgtttgtttgcc
acagagaccttcagtattgggttaaacatgcctgctaaaaccgtcgtgtttacaaatgtt
cgtaaatttgatggggacaagtttagatggatatccagcggagaatacatacagatgagt
ggccgcgctggtcgtcgaggtattgatgcacgtgggatatgcattcttatggtggatgaa
aggatggaaccatctacggctaaaatgatgctcaagggaaatgctgatagtttgaacagt
gccttccacttaagctacaacatgctattgaatcaattgcgttgtgaagatgctgatcct
gaaagtatgcttcgtaattcattttatcagttccaagctgatcgagcaattcctgacctt
gagaaacaagtgaaggctcttgaagaagagagggagtcgatgataattgaagaagaagat
agtttgaaaaattattataatctgattcagcaatacaaaagtttgaagaatgatattcgt
gatattgtgttttctccaaagtactgtttaccctatatgaaatctggaaggcctatatgt
ataaagtgcattgatgatgaaacatctccatctttctctattgaggatcatgttacctgg
ggtgttttaatggactttcatagagtaaaaagtattattgaagatgatgccaataaaaga
ccagaagatgcaagttatgcccttgatattcttacaaggtgcaatgtgagcaaagatggg
cttgggaagaaaacaattaagattgtccctttgaaagagcctggggaacctcttgttgtt
tctgtgcctctctctcaggttactattttaagtagtgcacgcttgaccataccgaaagat
cttctgcctatagaagcacgagagaatgccttgaagaagctttcagaatttatatctttg
tttttttctttctactactgttacttctagtattattcctattttcagttattgaatgat
ttttcattttttcagattcaaagcaactcgtataaaaaggctgtccgtaggttggaggca
ttagagagcctgttcgaaaaacatgaaattgcaaaatccccgcttatagagcaaaagctt
aaactgttaaacaggaaagaagaattgacatccaagatcagatcaattaagaaaacaatg
cgttcttccacagtattggcttttaaagatgagcttaaggccagaaaacgggttctaagg
aggctaggatatattacaagtgatgatgttgttgaattgaagggcaaggttgcttgtgag
atcagtagtgctgatgagttgactctgactgagcttatgttcagtggggttctgaaagat
ataaaggcagaagaaatggtctctcttctctcttgttttgtttggcaggagaagctccaa
gatgctgcaaagcccagggaggaactagagctgctctttacacaactacaggatacagca
cggaggatggctaaagttcagcttgaatgcaaggttcaaattgatgtggaaagctttgta
agttcatttcggcctgacattatggaagctgtatatgcttgggccaaaggatccaagttc
tatgagattatggaaattacacaggttttcgagggcagcttaataagagccatcagacga
ctggaagaagttcttcagcagcttattttagcagccaagtccattggagagagagatctc
gaatcaaaatttgaagaggctgtctctaaaattaaacgagacatagtatttgcagcatct
ctgtacttgtag
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