Hibiscus syriacus (Rose-of-Sharon): 120205553
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Entry
120205553 CDS
T09559
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120205553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsyr03041
]
120205553
03009 Ribosome biogenesis [BR:
hsyr03009
]
120205553
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120205553
Spliceosome [BR:
hsyr03041
]
Complex A
U2 snRNP components
U2 related factors
120205553
Complex B
120205553
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
120205553
Ribosome biogenesis [BR:
hsyr03009
]
Eukaryotic type
90S particles
Helicases
120205553
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
nSTAND3
SRP54
ABC_tran
T2SSE
AAA_7
FtsK_SpoIIIE
Flavi_DEAD
AAA_30
AAA_33
AAA_29
Motif
Other DBs
NCBI-GeneID:
120205553
NCBI-ProteinID:
XP_039061333
LinkDB
All DBs
Position
Unknown
AA seq
726 aa
AA seq
DB search
MGTERKRKVSLFDVVDEPSVKLGKSNGLGGIAALNANCSINRWNGRPYSQRYYDILEKRK
TLPVWQQKEEFLQVLKVNQTLILVGETGSGKTTQIPQFVLDAIDLETPDKRRKMMVACTQ
PRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLE
RYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKV
PGRLHPVEIFYTQEPERDYLEAAIRTVVQIHTCEPPGDILVFLTGEEEIEDACRKITKEI
GNMGDQVGPIKVVPLYSTLPPAMQQRIFEPAPPPVVVDGPPGRKIVVSTNIAETSLTIDG
IVYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNN
DLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDE
GNLTKLGEIMSEFPLDPQMAKMLVVSSEFNCSNEILSIAAMLSVPNCFVRPREAQKAADE
AKARFGHIDGDHLTLLNVYHAYKQNNEDQSWCYENFVNHRALKAADNVRQQLVRIMARFN
LKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPE
WVIYNEYVLTSRNFIRTVTDIRGEWLVDVAPDYYDLDNFPQCEAKRVLEKIYRKKEKDRE
ESRNRR
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgggaacggagaggaagagaaaggtgagcttgttcgatgtggtggacgagccatcggtg
aagctcgggaaatcgaacggtttaggaggcatagctgcgctgaacgccaactgctcgatc
aacaggtggaatggaaggccgtattctcaaaggtattacgatatcttggagaagaggaaa
acgctgccggtttggcaacagaaagaggagtttttgcaagtcttaaaggtgaaccaaacc
cttatcttagtcggtgaaaccggtagcggtaaaaccactcagataccacagtttgtgttg
gacgccattgatttagaaactccggataaacgtaggaaaatgatggttgcctgcacccag
ccacgaagagtggcagctatgtctgtttcacgccgtgttgctgaagaaatggatgtaact
attggagaggaggtgggttatagtattagattcgaggattgcagtagtgcaagaactgtt
ttgaaatatttaactgatggtatgcttttaagggaagctatgactgatcctcttttagaa
agatataaagtaattattctcgatgaggctcacgaaagaacattggcgaccgacgtgcta
tttgggcttttgaaagaagttttgaagaatcgacctgatcttaagcttgttgttatgagt
gctacactagaggctgaaaagtttcagggttatttttatggtgctccacttatgaaggtt
cctggtaggcttcaccctgtggagatattttacactcaggaacctgaaagggattacttg
gaggctgcgattcggacagttgtgcagatacacacgtgtgaacctcctggtgatatactt
gttttccttacaggagaggaggaaatagaagatgcctgtcgtaaaataacaaaagaaatc
ggaaatatgggggatcaagtaggccctattaaagtagtgcctctatactcaacccttcca
ccagcaatgcagcagaggatttttgagcctgctcctcctcctgttgtggtggatggccct
ccgggaaggaagattgtggtgtctacaaacattgctgaaacttccttgactattgatggc
attgtttatgttattgacccagggttttctaaacaaaaagtttataacccacgagtgcgt
gttgagtcgttactggtatctcctatatcaaaggcaagtgcgcaccaaagatctggacgt
gctggaagaacccaacctggcaaatgcttcaggctctacactgagaagagttttaataac
gatctgcagccgcagacatatcctgaaatattacgatcgaaccttgcaaatacagttctc
accttgaagaaactgggtattgatgatctggtgcattttgattttatggatccacctgct
ccagagacattgatgcgggcattggaagtgttaaattatttgggagcattggacgatgag
ggtaacttaacaaagttgggagagatcatgagtgaattccccttggatccacaaatggca
aagatgctcgtagttagttctgagttcaactgttcaaatgagattctttcaattgctgcc
atgctttcagtacccaattgctttgtacggcctagggaggcacaaaaagctgcagatgaa
gcaaaagctcggtttggacatattgatggtgatcatctcacacttttgaatgtgtaccat
gcttacaaacaaaacaatgaggatcaatcttggtgctatgagaattttgtcaaccataga
gcactgaaggctgcggataatgttagacaacagctggtgcgcatcatggccaggtttaat
ctcaagctgtgcagcactgatttcaacagccgtgactactatgtcaacattagaaaggcc
atgcttgctgggtatttcatgcaggtagcacatcttgagcgtacgggacactacttgaca
gttaaagacaaccaggtggtgcacttgcatccatcaaactgcttggatcacaagccagag
tgggtcatctacaacgagtacgtcctgacaagtcggaattttattcgtactgtgacagat
atacgtggtgaatggttagttgatgtagcaccagattattatgaccttgataacttcccg
caatgcgaggcaaagagagtcctcgaaaagatttatagaaagaaggagaaggatcgagag
gagagtcgtaacaggagatga
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integrated database retrieval system
