KEGG   Hibiscus syriacus (Rose-of-Sharon): 120206322
Entry
120206322         CDS       T09559                                 
Name
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
hsyr  Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03030  DNA replication
hsyr03410  Base excision repair
hsyr03420  Nucleotide excision repair
hsyr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hsyr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    120206322
   03410 Base excision repair
    120206322
   03420 Nucleotide excision repair
    120206322
   03430 Mismatch repair
    120206322
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hsyr03032]
    120206322
   03400 DNA repair and recombination proteins [BR:hsyr03400]
    120206322
Enzymes [BR:hsyr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     120206322
    6.5.1.6  DNA ligase (ATP or NAD+)
     120206322
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     120206322
DNA replication proteins [BR:hsyr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    120206322
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     120206322
DNA repair and recombination proteins [BR:hsyr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     120206322
   NER (nucleotide excision repair)
    Other NER factors
     120206322
   MMR (mismatch excision repair)
    Other MMR factors
     120206322
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 120206322
NCBI-ProteinID: XP_039061940
LinkDB
Position
Unknown
AA seq 787 aa
MLTLRPSHLLRSTCLSRPFSLLIPPTFFRPKSLSLSSLNPYFNMSSRPSAFDALMSGARR
LAGKKSPSSASSPAKKRKSPSPTPNPNPTKTIDDSTEVKPEPEIPSDGIEKPISDSLKPN
LVETEKLPDSKKTKAAGSVSERNAELKGKIGLLKKKPADFDPTMVAYWEKGERVPFLFLS
MAFDLISNEKGRIVITDIVCNMLRTVIDFTPDDLVATVYLAANKIAPAHEGLELGIGDAS
IIKALAEACGRTEPQIKSAYKQKGDLGLVAQASRSSQSMMRKPDPLTVVKVFDSFRLIAK
ESGKDSQEKKKNRIKALLVAATDCEPLFLIRLLQTKLRIGFSEQTLLAALGQAAVYNEIH
SRPPPNIQSPLEEAAKIAKQVFSILPVYDKIVPALLTGGVWDLPRTCSFTPGVPVGPMLA
KPTKGVAEIVNKFQDIDFVCEYKYDGERAQIHYMENGSVEIYSRNAERNTGKFPDVVSAI
SRFKKSSVKSFVLDCELVAYDRVQKKILPFQILSTRARKNVVVSEIKVDVCIFAFDVLYL
NGQSLLHEQLKVRKERLYDSFEEEAGFFQFATAITSNDLEEIQKFLDAAVSSSCEGLIIK
TLDRDATYEPSKRSLNWLKLKKDYMESVGDTLDLVPIAAFHGRGKRTGIYGAFLLACYDE
TSEEFQSICKIGTGFSEAQLEERSSSLRSKVIPEPKSYYCCDIKPDVWLETSEVWEVKAA
DLTISPVYSAAIGIVDPAKGISLRFPRLVRVREDKTPEQATSSEQVAEMYNAQKHNQTNN
EDDGEDD
NT seq 2364 nt   +upstreamnt  +downstreamnt
atgctaacgcttcgtccatctcatctccttcgctctacttgtctttctcgtcccttcagc
cttctcattcctcccactttctttcgccccaaatccctttctctttcctccttaaacccc
tacttcaacatgtcttctcgcccctccgccttcgatgctctcatgtccggagctcgccgt
ttggcgggcaagaagagcccttcctctgcttcttcgcccgccaagaaacgcaagtctccg
tcgcccacaccaaaccctaatcctaccaaaaccatcgatgactcaactgaagtcaaaccc
gaaccagaaatccccagtgatggaattgaaaaacccattagtgattccctcaaacccaat
ttagttgagacagaaaaactcccggattcgaagaagacgaaggcggctggcagtgtctcc
gagagaaatgcggagttgaaggggaaaattgggttattgaagaagaagccggcggatttt
gatccaacaatggtggcgtattgggagaaaggagagagagtgccgtttttgtttctaagc
atggcgtttgatttgatatcgaatgagaagggtcggattgtcataaccgatattgtttgt
aatatgttgaggactgttattgatttcacaccggatgatttggtggcgacggtttacttg
gcagcaaataagattgctccggcgcatgaggggttagagctgggcatcggagatgcctcc
attatcaaggcccttgctgaggcctgtgggagaactgaaccacagatcaagagtgcgtac
aagcaaaaaggagacctgggccttgttgcacaagctagtcgttcatctcaatcaatgatg
cgcaagcctgatccattaactgttgttaaagtgtttgattcctttaggctaattgcaaag
gaatctggaaaggatagtcaggaaaagaaaaagaatcgtatcaaggcacttcttgttgcc
gcaactgactgtgaacctctattcttgattcgtctgcttcagacaaaattgcggattgga
ttttcagagcagactctgttagctgcattaggacaggctgctgtatataatgaaatacat
tctagaccgcctccaaacattcaatctccattagaggaggctgctaagattgccaaacaa
gttttttctatccttccggtgtatgataaaatagtccctgcacttttgactggcggtgta
tgggatcttccaaggacttgtagctttacaccgggtgtccctgttggacctatgctagca
aaacctaccaaaggtgttgctgagattgtaaataaattccaggatattgactttgtatgt
gaatataaatatgatggggaacgtgcacagattcactatatggagaatggttcagttgag
atatatagtcgaaatgctgagcggaacactggaaagtttcctgatgttgtttctgcaatt
tctagattcaagaagtcctctgtaaaatcatttgttttggattgtgagcttgttgcttat
gatcgagttcaaaagaaaattttaccctttcagatccttagtacaagagcacggaaaaat
gtggtagtgagtgaaatcaaagttgatgtgtgcatatttgcttttgatgtcttatatctt
aacgggcaatcacttcttcatgaacaacttaaagttcgtaaagagaggctttatgattca
tttgaggaagaggcaggattttttcagtttgcaacagccataacatccaatgatcttgag
gagattcaaaaattccttgatgctgctgtttcttcaagttgtgagggtttaattatcaaa
acattggatagagatgctacgtacgagccatcaaagcggtcactcaactggctaaaattg
aagaaagactacatggaaagtgtcggagacactttagatctagtacctattgcggctttc
cacggccgcgggaaacggactggcatctatggtgcctttctcttggcatgttatgatgag
actagtgaagaattccagagcatctgtaaaattggtacaggattttctgaagcacagctt
gaagaacgttcttcaagtcttcgttctaaagtgattcctgaaccaaagtcatactattgt
tgcgacataaagccagatgtatggcttgagacttcagaggtttgggaggtaaaagcggca
gacttgaccattagccctgtctattctgctgcaattgggattgtggatcctgctaagggt
atatctctccggtttccccgtttagtccgcgttcgagaagataagacaccagagcaagct
acatcatccgagcaggtcgctgagatgtataatgctcaaaaacacaatcaaactaataat
gaagatgatggtgaggatgattga

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