Hibiscus syriacus (Rose-of-Sharon): 120209897
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Entry
120209897 CDS
T09559
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120209897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120209897
03041 Spliceosome [BR:
hsyr03041
]
120209897
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120209897
Spliceosome [BR:
hsyr03041
]
Complex B
Other components
Prp19-related factors
120209897
Complex C
120209897
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_19
ARM_TT21_C
NRDE-2
Motif
Other DBs
NCBI-GeneID:
120209897
NCBI-ProteinID:
XP_039064715
LinkDB
All DBs
Position
Unknown
AA seq
909 aa
AA seq
DB search
MSLAKELYPSHDDLLYEEELLRNPFSLKLWWRYLIARSDAPFKKRFIIYERALKALPGSY
KLWHAYLRERLEIVRNLPVTHPQYENLNNTFERALVTMHKMPRIWIMYLLTLTEQKLISK
TRRTFDRALCALPVTQHDRIWEPYLVFVSQKGIPIETSLRVYRRYLKYDPSHIEDFIEFL
VNSSLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATDVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRNLFEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESMV
ALKMENMDLSDEEEDVEEDEEDIRLDIALCKSKSKFEKKIFKGFWLHDDNDVDLRLARLE
HLMNRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTIDPMKAVGKPH
TLWVAFAKLYETYKDLANARVIFDKAVQVNYKTVDHLASVWAEWAEMELRHKNFKGALEL
MRRATAEPSVEVKRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGTLESTRAVYERILD
LRIATPQIIINYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKSK
LERARELFEHAVETAPSDAVKPLYLQYAKLEEDFGLAKRAMKVYDQATKAVPNHEKLGMY
EIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYAELEKSLGEIDRARGIYVFA
SQFADPRSDADFWDKWREFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDHN
IDEAKDKLKQAGMSEDEMAALERNLLPAADNTVSKDNSRKVGFVSAGVESQVDGGMKTTA
NLEDIDLPEESDSDEERVEIAQKDVPSAVFGGVRKREDGDDIDASAAKDKGGKGLLGALE
RIKRQKQAQ
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctggcaaaggaactatacccatctcacgatgacctcctttacgaggaggaactg
ttgagaaacccctttagtttgaaactctggtggaggtatttaatagctagatcagacgcc
cccttcaagaaaagattcataatatacgagcgagccttgaaagctttgcctggcagttac
aagctttggcatgcttatttgcgtgagcgtcttgaaattgttcgtaatttacctgttact
caccctcaatatgaaaaccttaataatacttttgagagggcgcttgtcacaatgcataag
atgcctaggatttggataatgtacttgctgacgttaactgagcagaagttgattagtaag
acacgcaggacgtttgatcgagcgctttgtgcattgcctgtgactcaacatgataggatt
tgggaaccttacttagttttcgtcagtcaaaagggtatccccattgagacatcgcttagg
gtttataggagatatttgaagtatgatcctagtcatattgaggattttattgagtttttg
gtgaattcaagtctgtggcaagaagcagcggagaggttagcatctgttttgaatgatgat
cagttttattcaataaagggtaaaactaagcataggctgtggttagagttgtgtgacttg
ctcacaactcatgcgacagatgtttcggggctcaatgtggatgcgataatcagaggtgga
attagaaagtttacagatgaagttgggagactctggacttcacttgctgattattacatc
agaagaaatctgtttgagaaggcaagggatatttttgaggagggaatgacgactgtggtt
accgtgagggatttcagtgtcatatttgatgcttattcacaatttgaagagagtatggtt
gctcttaaaatggagaacatggatttgagtgatgaggaagaagatgttgaagaggatgaa
gaggacatccgtttggacattgctctatgcaaatcaaaatcaaagtttgagaagaagata
tttaaggggttttggttacatgatgataatgatgttgatttgaggttggctcggttagaa
catttaatgaatagaaggcccgaactggctaatagtgtccttttgcgccagaatccacat
aatgtggagcaatggcatcgtagggtcaagctatttgagggaaatcccaccaagcaaata
ttgacatacacagaggcagttaggacgattgacccaatgaaagctgttggaaagccccat
actttgtgggtggcttttgcaaagctatatgagacttataaagatctggcaaatgctcgt
gtcatttttgataaagctgttcaagtaaattacaagactgttgatcatctggcaagtgta
tgggctgagtgggcagagatggaactgaggcataaaaatttcaaaggggcgctggagctg
atgagacgtgccacagctgagccttctgttgaggtcaaacgaagagtggctgctgacggt
aatgaacctgttcagatgaagcttcataaatccttgaggctgtggacgttctatgtagac
ttggaagaaagtttgggtactctggagtcaactcgagcagtttatgagagaatactggat
ttaagaattgctactccacaaattattataaactatgcatttttattggaggaaaacaaa
tattttgaagatgctttcaaagtgtatgaaagaggtgtcaagatattcaagtatccgcac
gtgaaggatatatgggtcacttatttgtcgaagtttgtaaagagatatgggaagtcaaaa
ctggaacgagcaagggaactgtttgagcatgctgttgaaaccgcaccttctgatgcagta
aaacccctttatcttcaatatgccaagctggaggaggattttgggctagcaaagcgagct
atgaaggtctatgatcaagcaaccaaggctgttccaaatcatgagaaactcggcatgtat
gagatttacattgcccgtgcagctgagatctttggtgttccaaaaacgagagaaatttat
gagcaggcaatagagtctggtcttccggataaagatgtgaagacaatgtgtttgaaatat
gcagagttggaaaagagcttaggagaaattgaccgtgcccgtggaatatatgtatttgca
tcccagtttgctgatccacgctctgatgcagatttttgggataaatggagggagtttgag
gtgcaacacggaaatgaagataccttcagagaaatgttgcggattaaacggagtgtgtct
gcaagttacagccagacacacttcattcttccagagtatctgatgcagaaggatcataac
attgatgaagcaaaagacaaattgaaacaggcgggtatgtccgaggatgaaatggctgct
cttgagaggaatttattacccgctgctgataatactgtttccaaagacaactctaggaaa
gtagggtttgtgagtgctggagttgagtcacaggtggatggtgggatgaaaacaacagca
aatctcgaagatattgatttgccagaggaaagtgactcagacgaagaaagggttgaaatt
gctcagaaagatgtcccgtctgccgtgtttggaggtgttagaaagagggaagatggcgat
gacattgatgcctctgctgccaaagacaagggtgggaagggactactgggtgcacttgag
cgaatcaaaaggcagaagcaagctcagtaa
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