Hibiscus syriacus (Rose-of-Sharon): 120210011
Help
Entry
120210011 CDS
T09559
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03013
Nucleocytoplasmic transport
hsyr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120210011
03015 mRNA surveillance pathway
120210011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120210011
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120210011
5.6.2.5 RNA 5'-3' helicase
120210011
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120210011
mRNA cycle factors
Common to processing body (P body) and stress granule
120210011
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
DEAD
NPHP3_N
Viral_helicase1
nSTAND3
Helicase_RecD
AAA_16
PhoH
SRP54
AAA_22
ATPase
Ribosomal_S13_N
AAA_32
AAA
Motif
Other DBs
NCBI-GeneID:
120210011
NCBI-ProteinID:
XP_039064781
LinkDB
All DBs
Position
Unknown
AA seq
1263 aa
AA seq
DB search
MDSQFETTSQPDPSSDAYTFLEFNTQGESDFEYTEFGDPIRSWPTPSDAHSAERSGSDHQ
SDTAASSSPSSASKGAGRASTSNNNNHSNSISNSAAAVDALVTGISGLNFEETVGDEDGG
YDYGKGDFAEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRSKHKEV
CLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWDLSQ
WCPLIDDRCFLQWLVKIPSEQEQLRARQISTQQINKVEELWKTNPDASLDDLEKPGVDDE
PQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRIAYFVFP
KEDNELRLVAGDELRLRYSGDAAHPAWQAVGHVIKLTAQEEVALELRGSQGVPIDVNHGF
SVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLP
ELNASQVFAVKCVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQCQGQVLVCAPSNVAVDQ
LAEKISTTGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGEL
SSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECL
IPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPC
LSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRSMFFYVQMGQEEISASGTSYLNR
TEAANVEKIVTSFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGSLRQQLYKEIEVASVD
SFQGREKDYIIVSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNG
LLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPNDNFGAATSSSS
NVDRRSSRARGSYMLPGPSNGTHKPVVHPTGFPMPRVPLPPFPGSTQPYAIPSRGTVHGP
VGAVPQVPQPGSRGFGAGRGNVSAPVGHHLPHQQGTQQNVGTIGSPFNFPPLENPNSQPS
VSGPLCQPGFVNNMPVQGPSQTIRDGFSMGGMSQDFLGEDFKSQGSHVPYNITDFSTQSG
YAVDYSTQGPQSGFPGNFLNQNSQAGYSRFGAGNEFMSQEYMNHGSQGLFTQAGFNDPSE
DDASQSHFGVANPNQLPSQGLMNSLYSQPFAHFNTQPLNLQPPQKQQPQQGQGSQNQHLH
YKG
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atggattctcaattcgagacgacctcgcagcctgacccgtcctccgacgcttacaccttt
ctcgaattcaacacccaaggcgagtccgatttcgagtacacggaattcggcgacccgatt
cgttcatggccgacaccctccgacgcacactctgccgaacgatccggctccgaccaccaa
tcggacactgccgcttcctcctccccctctagcgcttcaaaaggcgctggccgtgcctca
acgagcaataacaacaaccatagcaatagtattagcaatagtgcggccgcggtggatgcg
ttggtgacggggataagtggattgaattttgaggagacggttggggatgaggatggcgga
tatgactacggaaaaggggatttcgccgagcacgcttgtcggtattgtggggtttcgaac
ccggcttgcgtggttcgctgtaacgttccttcgtgtaggaagtggttttgtaattcaaga
gggaatacatcgggctcgcatattgttaatcatctcgtacgatctaaacacaaggaagtc
tgccttcataaggatagtcctttgggagaaactattcttgaatgctacaactgtggatgc
agaaacgttttccttcttggttttatatctgctaagacagagagtgttgttgttcttctt
tgtagagaaccttgtttgaatgtcaatgcgttgaaggacatgaactgggatttgagtcag
tggtgtccccttattgatgataggtgctttttgcaatggttggttaagatcccatccgaa
caagaacaattaagggcacgacaaattagtactcaacaaataaacaaggtagaagagctt
tggaagacaaatcccgatgcctcccttgatgatcttgagaaacctggtgtagatgatgaa
cctcagcctgtggcattgaagtatgaagatgcttatcagtatcaaaatgtttttgcgcca
cttattaagcttgaagctgactatgataaaatgatgaaagaatctcaaagcaaggacaat
gtcacagttcgttgggatattgggttgaacaagaaacgaattgcatattttgtctttcca
aaggaagacaatgaactgcgtctagtagctggtgatgagttgcggctgcgttattcagga
gatgctgcgcacccagcatggcaggctgttgggcatgtaatcaagctaactgcacaagag
gaggttgcgcttgagctccgtggtagtcagggtgttcctattgatgtaaaccatgggttc
agtgttgattttgtctggaagagtacaagttttgaccggatgcagggggcaatgaaaacg
tttgcagttgatgaaacaagtgttagtggatatatttaccatcaccttcttggccatgag
gttgaggttcagatggttcgtaatacactgcctcgccgttttggtgcacctggtctgcca
gaattgaatgcatctcaagtttttgcagtgaagtgtgttcttcagaagcctataagcttg
attcaaggcccccctggaacaggaaaaactgtgacttctgctgccattgtctatcacatg
gccaaacagtgtcagggacaggtcctggtctgcgctccaagtaatgtggctgttgatcag
ctagctgaaaagataagcacgaccgggttaaaggttgtaaggctttgcgcaaaatctaga
gaggctgtcagttctcctgttgaacatttgactctgcattatcaggtccggcatcttgat
acatccgagaagagtgaacttcacaagttgcaacaattgaaagatgaacaaggtgagttg
tcaagtagcgatgagaaaaagtacaaagcattgaagcgagcaacagagagggaaatatcc
caaagtgctgatgtcatttgttgcacctgtgttggggctggagatcctagactcgctaat
tttaggttccgccaggtacttattgatgagtctactcaggcgaccgaacctgaatgtctc
attcctttagttcttggagtgaagcaggttgtccttgttggtgaccattgccaacttggt
cctgttataatgtgcaagaaagcagctcgtgctgggctagcccagtctctgtttgagcgt
ctagttttacttggtgtgaaaccaattaggttgcaggtccaataccgtatgcacccatgt
ttgtcagagttcccttctaacagtttctatgaaggcacattacaaaatggagtgacaatc
aatgaaaggcaatcatccggcattgatttcccatggcctgtgcctaatcgttccatgttt
ttttatgtacagatgggacaagaggagattagtgctagtggcacatcatatctcaaccga
actgaagctgcaaatgttgaaaagatagttacctcattcttgaggagtggtgttgttccc
agtcagataggggtcataacaccttatgagggacaaagggcatatattgtgaactatatg
tcaagaaatggttctttgagacagcagctttacaaggaaattgaggttgcaagtgttgac
tcattccaaggacgagaaaaagattacatcattgtgtcgtgtgtgagaagtaatgaacat
cagggtattggatttttaaatgatcctcgcaggcttaatgttgccctaacacgtgctcga
tatggtatcgtgattcttggtaaccctaaagttcttagcaaacaacctctttggaatggt
ttattgacacattacaaggaacatgagtgtttggttgaaggaccgctcaataacttgaag
cagagtatggttcagttccaaaagcccaaaaagatctacaatgaccggagactgttcttt
ggtggtggacctgggattgtacctaatgataattttggggctgctacttcatctagttcg
aatgttgatagaagaagcagtcgtgctcggggtagttacatgcttcctggtccatccaat
ggtacacacaagcctgtagtgcaccctactgggttcccaatgcctcgggttcctcttcca
ccatttccaggttctactcagccttatgctattccatctcgtggaactgtacatggacca
gtaggagctgttcctcaagtccctcaaccaggaagtcgaggctttggagctggtcgtggt
aatgttagtgctcctgttggccatcacctcccacaccagcaaggtacgcagcaaaatgtt
ggaactattgggtctcctttcaactttcctcctttggagaacccaaacagccagccatct
gtaagtggtccattgtgtcaacctggatttgttaacaatatgcctgtccaagggccaagc
caaacaattcgtgatggattttcaatgggaggaatgtcccaggacttcttaggtgaagat
ttcaaaagccaaggctcgcatgttccctataacattactgatttttcaacacagagtgga
tatgctgttgattattctactcaaggaccacagagtgggttcccagggaactttctaaac
cagaattctcaagctggatactctcgtttcggtgctggaaatgaattcatgtcccaggaa
tacatgaatcatggatcacaaggcctgtttactcaggctggatttaatgacccttcagaa
gatgatgcatcacagagccactttggggtggctaatcccaaccagcttccgtcccagggt
ctgatgaattctctctactcccagccctttgcgcacttcaacacacagccactaaacttg
cagcctccgcaaaagcaacagcctcagcagggccagggctcccaaaaccaacaccttcat
tataaaggttaa
DBGET
integrated database retrieval system
