Hibiscus syriacus (Rose-of-Sharon): 120210317
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Entry
120210317 CDS
T09559
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar sorting protein 3-like
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120210317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsyr04131
]
120210317
Membrane trafficking [BR:
hsyr04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
120210317
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-Vps39_C
Clathrin
Vps39_1
CNH
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
120210317
NCBI-ProteinID:
XP_039065009
LinkDB
All DBs
Position
Unknown
AA seq
992 aa
AA seq
DB search
MSKLKSRIAVEPFTHFDLPTHHLSISSLSLSQSTLYLGTRNGSLLLLSLNPNPTPTPNPP
PIESLSLPSLSRNVSLLRTVSVSDSPVESIFVLSEIGFVLVLSDGFLFLTDSLLIQPVKK
VGGLRGISIIARRFRGTNSQSTDLTGTASNLSKGQRILDKFGGVRANGVKTRDLEQNREC
AYVFSLVIGKKLMLIELVSGSDFANPSFVILREMQCFDGVKSMVWLDDSIIVGTINGYSL
FSCVTGQSGVIFSLPDLSRPPLLKLLWRNWEVLLLVDNVGVIVDALGQPVGGSLVFCKGG
PDSLGDLSSYVAVVRDGKMDLYHKKSGNCIQTVTFGVEGVGQCIVADEKNRSGEFVGVAT
PTKVICYRKVPSEEQIKDLLRKRXFNEAISLVEELECEGELSKEVISLFHAQVGFLFLFD
LHFEEAVDHFLQSETMQPSEVFPFIMRDPNHWSLLVPRNRYWGLHPPPVPLEDVVDDGLL
AIQKAIFLRKAGVETVVDEHFLSNPPARAELLESAIKNIIRYLEVSRQKDLTLPVKEGVD
TLLMYLYRALNYVDDMEKLASSENCCIVEELETLLDGSGHLRALAFLYASKGLSSKALAI
WRILARNYSSGLWKDPAVENGVHDGNACVTSGREIAATEAANILQDSSYQDLVLQHLAWI
ADINPALAVRVLTSDKRENQLSPDEVIAAIDPKKVEILQCYLQWLIEDQDSDDTRFHTLY
AVSLAKSTIETFNSESSSQGPDAGRQKHLENIDAQRDSIFESSVRDRLQIFLQSSDLYDP
GEVLDLIENSELWLEKAILYRKLGQESLVLQILALKLEDSEAAEQYCAEIGRPDAYMQLL
DMYLDPQDGKEPMFKAAVRLLHNRGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHH
HRQGQIVHHLSRAVDIDARLARLEERSRLVQINDESLCDSCHTRLGTKLFAMYPDDTVVC
YKCFRRQGESTSVTGCDFKQDVLFKPGWLVTR
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagctcaaatcccgcatcgcggtcgagcccttcactcacttcgacctcccgacc
caccacctttcaatcagctccctatctctttcacaatccaccctttacctcggcactcgg
aacggttccctccttttactctccctaaaccccaaccctactccaaccccaaatccacct
ccaatcgaatccctttctctcccttccctttcccgtaacgtttcccttctgcgcaccgtt
tccgtttccgactctcccgtggaatcgatattcgtgctctctgagatcggcttcgtcttg
gtattatccgatgggttcttgtttttaacggattcgctcttgattcaaccggttaaaaaa
gtaggtggtttgagaggaattagcataattgctcgtagattccgaggaacgaattcacag
agcaccgatttaaccggtactgcttcgaatttatcgaaagggcaacggattttggataaa
ttcggaggtgttagggcgaacggggtgaaaacgagggatttagagcagaatcgagaatgt
gcttacgttttttcccttgttattggtaagaaattgatgttaatagagcttgtttcaggc
agtgattttgcgaatccttcttttgtgatcctaagagaaatgcagtgttttgatggagtg
aagtctatggtttggcttgatgattccattattgtcggtacaattaatgggtatagtttg
ttttcttgtgtcactgggcaaagcggggtgattttctcgctacctgatttatccaggccg
ccattattgaagcttttgtggagaaactgggaggttttgttgctagtggacaatgtaggc
gtgattgttgatgctcttggccagcctgttggtgggagcttggtgttttgtaagggtggt
cctgattcgcttggggacttgtcatcgtatgtagcagttgttagggatgggaagatggat
ctgtaccataagaaatctggtaattgcattcaaacggtaacttttggtgttgaaggagtt
ggtcagtgtattgttgctgatgaaaaaaataggagtggggaatttgttggtgttgctact
cccacaaaggttatttgctaccggaaagttccttcagaagaacaaataaaagatctgttg
agaaaaaganatttcaatgaagctatctccttggtggaggagcttgagtgtgaaggtgaa
ctgtctaaagaagtgatttccctttttcatgctcaagtgggtttcctgtttctttttgac
ttgcactttgaggaagcggtggatcactttttgcagtcagaaaccatgcagccttctgaa
gtgtttccatttataatgcgtgaccctaatcactggtcactcctggttcctcgaaatcgg
tattggggtttacatcctcctcctgtacccctcgaagatgttgtggatgatggattgtta
gctattcaaaaggccattttcctaagaaaagcaggtgtagaaactgtagttgatgaacat
tttctatcaaatccaccagccagagctgaattgctggagtctgcaattaagaacattatc
aggtatttagaggtgtctcgtcagaaagatttaactttgcctgtgaaggagggggttgat
acgcttttaatgtacttatatagagctctaaattatgttgatgatatggagaagctggct
tcttctgagaattgttgtatcgtggaggaattagaaactttattagatggctctgggcac
ttgcgggcacttgccttcctatatgctagtaaagggttgagctcaaaggctcttgccatt
tggcgcatcttggcaagaaattattcctctggtctctggaaagatcctgctgtggaaaac
ggagtacatgatggcaatgcatgtgtaacatccggtagggagatcgctgcaactgaggca
gcaaatattcttcaggattcatcttaccaggatttggttctgcagcatcttgcatggatt
gcagacataaacccagcacttgctgtacgagttttgacatcggataaaagggagaatcag
ctttcaccagatgaagtgattgcggcaattgatccaaaaaaggttgagattctccaatgc
tatctccagtggttaattgaagatcaagactctgatgacactcggttccatactctctat
gctgtttcacttgccaagtcaactattgaaacctttaattcagaaagcagctcacaaggc
cctgatgctggaaggcaaaagcatttggaaaacattgatgctcaaagagattcaatcttt
gaaagttctgtgcgggaccggttgcagatatttttacagtcttcagatttgtatgatcca
ggggaggtccttgatttgatagaaaactcagagttatggttagaaaaggctattctatac
cgaaaattgggccaagagtcattggtgctccaaatcttagcgctgaaactggaggatagc
gaagctgcagaacagtattgtgctgagattggccgaccagatgcttatatgcagctactt
gatatgtatttggatcctcaagatggtaaagagcctatgtttaaggcggctgttcgtctt
ctgcataatcgtggagagtcgctagatcctctgcaagtattagagacactctctcctgac
atgcctctccaacttgcatcagatacaatattgagaatgttgagggctcgactacatcat
caccgtcaaggacaaattgtgcatcatctatcccgtgccgtagacatcgacgcaagactt
gcaagattggaagaaaggtctcggcttgtgcagattaatgatgagagcctttgtgattct
tgtcatacccgccttggaacaaagctttttgccatgtatccggatgataccgttgtctgt
tacaagtgtttccgtcgtcaaggcgagtcaacttctgtaactggttgtgattttaagcaa
gacgtcttattcaaacctggttggctggttacccgataa
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