Hibiscus syriacus (Rose-of-Sharon): 120210654
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Entry
120210654 CDS
T09559
Name
(RefSeq) DNA mismatch repair protein MSH2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120210654
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsyr03400
]
120210654
DNA repair and recombination proteins [BR:
hsyr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120210654
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Motif
Other DBs
NCBI-GeneID:
120210654
NCBI-ProteinID:
XP_039065285
LinkDB
All DBs
Position
Unknown
AA seq
941 aa
AA seq
DB search
MDANFDEHNSLPELKLDAKQAQGFLSFFKTLPNDPRAVRFFDRRDYYTAHGENATFIAKT
YYRTTTALRQLGSGCNGLSSVSVNKNMFETIIRDLLLERTDHTLELYEGSGSNWRLVKSA
SPGNLSSFEDVLFANNEMQDTPVVVALFPSFHENGCTVGFGYVDLTKRILGLAEFLDDSH
FTNVESTLVALGCKECLFPMEIEKSSECKNLNDALIRCGVMVTQRKKSEFKTRDLMQDLG
RLVKGSIEPVRDLISGFEFAPAALGALLSYAELLADEGNYETYSILRYNLGSYMRLDSAA
MKALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDISEINSRLDLVQAF
VEDTDLRQDLRQHLRRISDIERLMRNIKRRSAGLQHIVKLYQSSIRIPYIKSSLEKCEQF
SSLIKERYLDPFELLTGDDHLNKFIALVETSVDLDQLENGEYLISPSYDDGLAALKSEQE
SLERQIHNLHKQTAFDLDLQVDKALKLDKGTQFGHVFRITKKEEPKVRKKLSTQFIVLET
RKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVVQTTATFSEVFEPLAGLLSELDV
LLSFADLASRCPTPYTRPEITPADVGDIVLEGSRHPCVEAQEWVNFIPNDCRLVRGRSWF
QIITGPNMGGKSTFIRQIGVNILMAQVGCFVPCEKASISVRDCIFSRVGAGDCQLHGVST
FMQEMLETASILKGATEKSLVIIDELGRGTSTYDGFGLAWAICEHIIEVVKAPTLFATHF
HELTALAHESANHELQKKQIVGVANYHVSAHIDSSSHRLTMLYKVEPGACDQSFGIHVAE
FANFPESVVALAREKAAELEDFSPTSMISADTKPEGGSKRKRDYDTDDISRGAAEASKFL
KEFAELPLETMDLKQALQHVSKLKDDLQKNAMNCEWLQQFF
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggatgcaaattttgatgaacacaacagtcttccagagctgaaattggacgctaagcag
gcccaagggtttctctcattcttcaaaactctaccgaatgatccaagagctgttcggttt
tttgatcgccgggattattatacggctcatggtgaaaatgcaacctttattgctaagaca
tattatcgtactactactgctctccggcaactcggtagtggctgtaatggcctttcaagt
gtaagtgttaataaaaatatgtttgaaacaatcatccgtgatcttctcttggagagaaca
gaccacactctggagctctatgaaggtagtggctccaattggaggttggtgaaaagtgcc
agccccgggaatctgagcagttttgaagatgttctctttgccaacaatgagatgcaggac
actcctgttgttgttgcattgtttcctagcttccatgaaaatggttgcactgttgggttt
ggttatgttgatttaacaaagagaatacttggtttggctgagtttcttgatgatagtcac
tttactaatgtggagtcaactttggttgcccttggttgcaaggagtgcctttttcccatg
gagattgaaaagtccagtgaatgtaaaaatctcaatgatgctttgatcagatgtggtgtt
atggtaactcagagaaagaaaagtgagtttaaaactagggatctgatgcaggatcttggt
aggctagtcaaaggctccattgaaccagttcgagacttgatttctgggtttgaatttgca
cctgctgctttaggagccttactatcctatgcagaattactagcagatgaaggcaattat
gaaacttatagcatcttgaggtacaacctgggtagctacatgagattagattctgctgca
atgaaggcgttgaatgtcctagaaagcaaaactgatgcaaacaaaaattttagtctgttt
ggtcttatgaatagaacctgtactgctgggatgggtaagcggttgcttcatatgtggcta
aaacagcctttgttagacataagcgagataaactcgaggcttgatttggtgcaagcattt
gtcgaggataccgatcttcgtcaagatttgagacagcatctaagaagaatttcagatatt
gaacgacttatgcgaaacatcaaaagaagaagtgctggtttgcagcatattgtaaagctt
tatcagtcaagtataagaattccctacattaaaagttccctggaaaaatgtgaacagttt
tcttccttgatcaaggaaaggtatctggatccttttgagctattgactggtgatgatcat
ttgaacaagttcattgctcttgttgaaacttctgttgacctagatcaacttgaaaatggg
gaatacttgatttcacctagctatgatgatggactagctgcacttaaaagtgaacaggag
tcactagagcgccaaatacacaatttacataaacaaacagcttttgatcttgatctgcaa
gtagacaaagcgttaaagttagataagggcacacagtttggacatgttttcagaattaca
aagaaagaagagcccaaagtaaggaaaaagctctccacccaatttattgtccttgaaacc
cgaaaggatggagtgaaattcactaacacgaagcttaagaagttgggggaccaataccaa
aaggtacttgaggagtataagaattgtcaaaaagagctagttaaccgagtggttcaaact
acagcaactttctctgaggtgtttgagcccttagctgggttgctctctgaattggatgtc
ttacttagttttgcagatttagcttcgagatgccctaccccatacacaagaccggaaatt
actccagctgatgtgggggatattgttttggaaggaagtagacatccttgtgtggaggct
caagagtgggttaattttataccaaatgattgtagacttgtaagaggcaggagctggttc
cagatcatcactggccctaatatgggtgggaaatcaacattcatccgccagattggtgtt
aacattctaatggcacaagtaggctgttttgttccttgtgagaaagctagcatttctgtt
cgagattgcattttttcccgtgttggtgctggtgactgccaactacatggagtttctacc
tttatgcaagaaatgctcgaaactgcatcaatattgaaaggtgctaccgagaagtcattg
gtaatcatcgatgaattggggcgaggaacatcaacctatgatggatttggtttagcatgg
gccatatgtgagcatattattgaggtggtcaaagcaccgactttgtttgctacccacttc
catgaattgactgcattagcacatgaaagtgccaatcatgagttgcagaaaaaacagatt
gttggtgtggcaaactatcatgtcagtgctcacattgactcatcaagccacagattgaca
atgctgtacaaggttgagccaggggcatgtgatcaaagtttcggtattcatgtggcagaa
tttgccaattttcctgaaagtgtcgttgcacttgcaagagaaaaggctgccgaactggaa
gatttctcaccaacttcaatgatttcagctgatactaaaccagaggggggttcaaaaagg
aagagagattatgatactgatgacatatctagaggtgctgcagaggcttccaagttttta
aaggagtttgctgagctgccattggagaccatggacctgaaacaggctctgcaacatgta
agcaagctaaaggatgacttgcaaaagaatgcgatgaactgtgagtggctacaacaattc
ttctag
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