Hibiscus syriacus (Rose-of-Sharon): 120211224
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Entry
120211224 CDS
T09559
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-I-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120211224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsyr03021
]
120211224
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120211224
Transcription machinery [BR:
hsyr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120211224
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
120211224
U7-dependent histone pre-mRNA processing factors
120211224
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
120211224
NCBI-ProteinID:
XP_039065752
LinkDB
All DBs
Position
Unknown
AA seq
694 aa
AA seq
DB search
MASAGQPPSLKRRDAPSMREGDQLTLTPLGAGNEVGRSCVYMTYKSKTVLFDCGIHPAYS
GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFRGRVFMTHATKAVYKLLLT
DYVKVSKVSVEDMLFDEQDINRSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVD
IAGVRVLYTGDYSREEDRHLRAAELPQFSPDICVIEATYGVQLHQPRHIREKRFTDVIHS
TISQGGRVLIPAFALGRAQELLLILDEYWSTHPELHNVPIYYASPLXKKCMAVYQTYILS
MNERIRNQFANSNPFKFKHISPLNSIEEFSDVGPSVVMASPGGLQSGLSRQLFDKWCSDK
KNACVIPGYVVEGTPAKTIINEPKEVTLMNGLNAPLHMQVHYISFSAHADYAQTSTFLKE
LMPPNIILVHGEANEMGRLKQKLITEFTDGNTKIITPKNCQSVEMYFSSEKMAKTIGRLA
EKTPEVGETVSGVLVKKGFTYQIMAPDDLHIFSQLSTANITQRITIPFTGALGVIKHRLE
QIYESVESSTDEESGVPMLRVHDRVTVKQDSDKHISLHWTSDPISDMVSDSVMALVLNIT
REIPKIVVEFEDVKMEEENGKKAEKVIHALLVSLFGDVKLGENGKLLITVDGNVAHLDKQ
SGDVESENEGLKERVKTAFRRIQNAVKPIPLSAS
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggcttcagcggggcagccaccgtcactcaaaagaagagatgcgccatcgatgagagaa
ggagatcagcttactcttactcctttaggcgccggcaatgaagtcggtcgttcttgtgtt
tacatgacgtacaaaagcaaaactgtactgtttgattgtggaattcatcctgcttactcg
ggtatggctgctttgccttattttgatgagattgatccttcaacaatagatgttcttctt
atcacccactttcacttggaccatgctgcttcccttccatattttctagagaagaccaca
ttcagaggtagagtttttatgactcatgcaacgaaagctgtttataagcttcttctgact
gattatgttaaagtgagcaaagtttctgttgaagacatgttattcgatgaacaggacatt
aaccgctccatggataaaattgaggttattgattttcatcaaactgtggaagtaaatggc
attaagttctggtgctatactgctgggcatgttctcggtgctgctatgtttatggttgac
attgccggtgtacgagtgctctacactggagactattctcgtgaagaagatcgtcatctc
cgtgctgctgagctgccacagttctctcctgatatatgtgtaattgaagccacttatggt
gtccagcttcatcaaccccgacacattcgggagaagcgatttactgatgttatccattct
acgatttctcaagggggtcgtgttctaatcccagcgtttgcccttggtcgtgcccaggaa
cttctgttgattcttgatgagtattggtcaacccaccctgagcttcataatgttccgata
tattatgcttccccacttngcaaaaagtgcatggctgtttatcagacatacatactgtcc
atgaatgagagaattcgaaaccagtttgcaaactcaaaccccttcaagttcaagcacatt
tctccgttaaatagcatcgaggaatttagtgatgtaggtccatctgttgtaatggcaagt
ccaggtggtcttcagagtgggctgtcacgccaactctttgacaagtggtgttccgataag
aaaaatgcatgtgttatacctggttatgttgtcgaagggacgcctgcaaaaacgattatt
aatgaaccgaaggaagtgacactcatgaatggtctcaatgctcccttacacatgcaggtt
cattacatttcgttctctgcccatgcagactatgctcagacaagtacattcttaaaggag
cttatgcctcctaatataattcttgttcatggagaagcaaatgagatgggaagactcaaa
caaaagcttatcaccgagtttaccgatggcaacaccaaaattattaccccgaagaattgt
cagtctgttgagatgtattttagctccgagaaaatggctaagaccattggaagactggct
gaaaagaccccagaagtaggtgaaactgttagtggtgttctggttaagaaaggtttcaca
taccagataatggctcccgatgatctccatatcttctcacagctttcaaccgcaaacatc
actcagaggattactatccctttcaccggtgcacttggtgtgataaagcatcgtcttgag
cagatatatgagagtgtggaatcttcaacagatgaagaatctggggttccaatgttgcga
gtgcacgatagagtgaccgtgaagcaggattcagataagcacatctcattgcattggaca
tcagatcccataagtgacatggtatcagattctgttatggcattggttctgaacattact
cgggagatccctaagatagtagttgagtttgaggacgtaaaaatggaagaagaaaacggg
aagaaggcagaaaaggttattcatgctctcctggtttcactctttggggatgtcaaatta
ggagaaaacgggaagcttttgataactgttgatgggaatgtagctcatcttgataaacag
agcggggatgtcgagagcgaaaacgaaggtctgaaggagagagtaaagacagcttttcga
cgaattcaaaatgcagtaaaaccaatccctctctcagcatcatag
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