Hibiscus syriacus (Rose-of-Sharon): 120213277
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Entry
120213277 CDS
T09559
Name
(RefSeq) spliceosome-associated protein 130 A-like
KO
K12830
splicing factor 3B subunit 3
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120213277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsyr03021
]
120213277
03041 Spliceosome [BR:
hsyr03041
]
120213277
03036 Chromosome and associated proteins [BR:
hsyr03036
]
120213277
Transcription machinery [BR:
hsyr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
120213277
Spliceosome [BR:
hsyr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120213277
Complex B
120213277
Complex C
U2 SnRNP specific factors
120213277
Chromosome and associated proteins [BR:
hsyr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
120213277
TFTC complex
120213277
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
120213277
NCBI-ProteinID:
XP_039067377
LinkDB
All DBs
Position
Unknown
AA seq
1202 aa
AA seq
DB search
MYLYNLTLQQATGIVSAINGNFSGGKIQEIVVARGKILSLLRPDELGKLQTLHSVEIFGC
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGVDCGFDNPI
FAAIELDYSEADQDSTGVAAGEAQKHLTFYELDLGLNHVSRKWSDQVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDIRAVIPRRADLPEERGVLIVSAATHKQKSMFFFLLQ
TEYGDIFKVTLEHGNDGVTELKIKYFDTIPVTASMCVLKTGFLFAASEFGNHALYQFQAI
GDDPDVESSSSTLMETEEGFQPVFFQPRGLKNLVRIDRAESLMPIMDMKIANLFEEETPQ
IYSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDAFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
TTVKVGSNGLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQVLSVQSVSSPPESLLFLEVKASIGGEDGADHPANLFL
NAGLQNGVLFRTVVDMITGQLSDSRSRFLGLRAPKLFSVKVRGRPAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEFAASFSSDQCAEGVVSVAGDALRVFTIERLGETFNETAIPLRYTP
RRFVLQPKRKLLVIIESDQGSYTAEEREAARKECFEAAGMGENGNGNMNQMENGGDDEDK
EDPLCDEQYGYPKAESNKWVSCIRVLDPRTAATTCLLELQDNEAAFSVCTVNFHDKEYGT
LLAVGTGKGLQFWPKRSLVAGFIHIYRFLEDGRSLELLHKTQVEGVPLALCQFQGRLLAG
IGSVLRLYDLGKKRLLRKCENKLFPNSIVSIQTYRDRIYVGDIQESFHFCKYRRDENQLY
IFSDDVVPRWLTASYHIDFDTMAGADKFGNVYFVRLPQDVSDEIEEDPTGGKIKWEQGRL
NGAPNKVEEIVQFHVGDVVTSLQKASLIPGGGECVLYGTVMGSLGALLPFTSRDDVDFFS
HLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVVDGDLCEQFPTLPLDLQRKIADELDRTPG
RY
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgtatctgtacaatttaacccttcagcaagccaccggcatcgtttccgccataaatggc
aacttctccggcggaaaaatccaagaaattgtcgtcgcccgtggtaagatcctttccctt
ctccgacccgacgagcttggtaagcttcaaacacttcactccgtcgaaattttcggctgc
atacgttccctagctcagttccgtctaaccggagctcaaaaggactatattgtagttgga
tctgattcgggtcggattgttatccttgaatacaataaagagaagaatgtctttgataaa
gttcaccaagaaacttttgggaaatctgggtgtcggcggattgtcccgggtcaatactta
gctattgatccgaaaggaagagctgtaatgattggtgcctgtgagaagcagaaattagtt
tatgttttgaacagagatactgctgctagattaaccatttcttcgcctttagaagctcat
aagtcgcatacgatagtttactcaatctgtggtgttgattgtggatttgataatcctatt
ttcgctgccattgagttggattactcggaggcagatcaggattctaccggagtggctgct
ggtgaggcacagaagcatttgacattctatgaacttgatttagggcttaaccatgtgtct
aggaagtggtcggatcaggttgataatggggcgaacatgttggtcacggtgcctggtggt
ggtgatgggccgagtggggttttagtttgtgctgagaattttgttatctataagaatcag
gggcatccagacattagagcagtgattcctagacgggctgatttgccagaagaacgtggt
gttttgattgtgtcagcggctacacataagcagaagtcaatgttcttctttcttttgcag
acagaatatggggatatttttaaggttacattggaacatggaaatgatggagtcacggag
ttgaagattaagtattttgatacaattccagttacagcttcaatgtgtgtgttgaaaact
ggttttctgtttgcagcttcggagtttggaaatcatgccttgtatcagtttcaggctatt
ggggatgaccctgatgttgaatcatcatcgtctacattgatggaaacagaagaaggtttt
cagcctgtgtttttccagcctagagggcttaagaatctagttaggattgaccgagctgag
agtctgatgccaataatggacatgaaaattgctaacctctttgaggaagaaacacctcag
atatattcactttgtggacgtggtccccgttcatcattgaggatactaaggcctggtttg
gccatcagtgagatggctgtctcacagcttcctggtgtcccaagtgctgtgtggacagta
aagaaaaatgtgaatgatgcctttgatgcatacattgtcgtgtcatttgccaatgcaact
cttgttctttccattggtgaaacagttgaagaagttagtgatagtgggtttctcgatact
acaccttctcttgctgtttcattgattggtgatgattcacttatgcaagttcacccaaat
ggtatcaggcatataagggaagatggacgcattaatgagtggagaactcctggaaaaagg
acaactgttaaagttggctcaaatggacttcaagtggttatcgcattgagtggaggcgag
cttatatactttgaggtggatatgactgggcaattgatggaagtggagaaacatgaaatg
tccggagatgtggcatgtctggacattgcccctgttcctgaaggaagacagaggtcccgc
tttcttgctgttggttcatatgataatacaatccgtatattatctttggatcctgatgac
tgtatgcaggttctgagtgttcagagtgtatcttcacctcccgagtctcttcttttcctt
gaagttaaggcatcgattggtggggaggatggtgctgaccatcctgccaatcttttcctt
aatgctggtctgcagaatggagttctgttccggacggtggtggatatgataacagggcaa
ctttctgattcccgttcacgattcttagggcttagagccccaaagttgttctctgttaaa
gttagaggccgacctgcaatgctttgcttgtctagtcgaccatggcttggttatattcac
cagggacattttctgttaacacccctttcatatgaaacacttgaatttgctgcctcattt
tcatctgatcagtgtgccgaaggtgttgtttccgttgctggggatgcattgagagttttc
actattgagcgtcttggagaaaccttcaatgagactgctattcctttgaggtacactcct
aggaggtttgtattgcaacctaagcggaaattgttggtaattatagagagcgaccaagga
tcatatactgcagaagaacgcgaagctgcaagaaaggaatgctttgaggctgctgggatg
ggagaaaatggcaacggtaatatgaaccaaatggaaaatggtggggatgatgaggacaaa
gaggatcccctctgtgatgagcagtatggttatccaaaggcagagtcaaacaagtgggtt
tcttgcattagagttcttgatcccaggacagctgccacaacttgccttttggagcttcag
gacaatgaagctgctttcagtgtgtgtactgtgaatttccatgataaagagtatggaact
ctcttggctgttggcacgggcaaggggctacagttttggcccaaaagaagcttagttgca
ggattcattcacatttataggtttctagaagatggcagatcacttgaacttctgcacaag
acacaagtggaaggtgttcctcttgctttatgccagtttcagggaagactacttgctggg
ataggatctgtgctccgattatatgatttggggaaaaagagactgcttaggaaatgtgag
aataagcttttccctaactctattgtctctatccagacttatcgggatagaatatatgtt
ggggacatccaagagtcgttccatttttgcaagtataggagggatgaaaatcaactgtac
atattttccgatgatgtagttccaagatggcttactgcatcataccatatagattttgac
accatggctggtgcagacaagtttgggaatgtctattttgtgcggctaccacaagatgtg
tcggatgaaattgaggaagatccaactggtggaaagataaaatgggaacaagggaggctc
aatggagctcctaacaaggtagaggagatagttcagttccatgttggagatgtggtgact
agcttgcagaaggcatctcttataccaggtggtggagaatgtgtgctttatggaacggta
atggggagcttgggggcattgctcccattcacttctcgtgatgatgttgacttcttttct
cacctagagatgcatatgagacaagaacaccctcccttgtgcggacgagatcatatggct
tatagatctgcttatttccctgtcaaggatgtggtcgatggggatttgtgcgagcagttt
ccgaccctaccattggatttacagagaaaaattgcagacgaattggatcgtactcctggg
agatactga
DBGET
integrated database retrieval system
