Hibiscus syriacus (Rose-of-Sharon): 120213516
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Entry
120213516 CDS
T09559
Name
(RefSeq) TATA-box-binding protein-like isoform X1
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120213516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsyr03000
]
120213516
03021 Transcription machinery [BR:
hsyr03021
]
120213516
Transcription factors [BR:
hsyr03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
120213516
Transcription machinery [BR:
hsyr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120213516
RNA polymerase III system
TFIIIB
120213516
RNA polymerase I system
SL1/TIF-1B
120213516
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
DUF3378
DUF4295
Motif
Other DBs
NCBI-GeneID:
120213516
NCBI-ProteinID:
XP_039067564
LinkDB
All DBs
Position
Unknown
AA seq
202 aa
AA seq
DB search
MAEQGGLEGSQPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKQIALQARNAEYNPKRFAA
VIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIV
GSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRD
ETYTAFENIYPVLTEFRKNQQW
NT seq
609 nt
NT seq
+upstream
nt +downstream
nt
atggcggaacaaggtggcttggaagggagccaaccagtggatctttctaagcatccatct
ggcattgttcctactcttcaaaacattgtatcaactgtaaacttagattgcaagttggat
cttaagcagattgcactgcaagctcgaaacgccgagtataatccgaagcgttttgctgca
gtcattatgagaatcagggagcccaaaactacagctttgatttttgcctctggaaagatg
gtctgcactggtgcaaaaagcgaacagcaatctaaactggctgcaaggaagtatgccaga
attatccaaaagcttggttttcctgctaagtttaaggacttcaagattcagaacattgtt
ggttcttgtgatgttaaatttcctatcagacttgaaggtcttgcatactcccatggtgcc
ttttcaagttatgaaccagaactctttccgggcctgatctatcgtatgaaacaaccaaag
attgtgcttcttatttttgtgtcagggaagattgtgatcactggagctaaggttagagat
gagacatacacagcctttgagaacatatatcctgtccttacagagttccggaaaaaccaa
caatggtaa
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