Hibiscus syriacus (Rose-of-Sharon): 120214401
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Entry
120214401 CDS
T09559
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120214401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsyr03041
]
120214401
03009 Ribosome biogenesis [BR:
hsyr03009
]
120214401
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120214401
Spliceosome [BR:
hsyr03041
]
Complex A
U1 snRNP components
U1 related factors
120214401
Complex B
120214401
Ribosome biogenesis [BR:
hsyr03009
]
Eukaryotic type
Pre-60S particles
Helicases
120214401
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
120214401
NCBI-ProteinID:
XP_039068238
LinkDB
All DBs
Position
Unknown
AA seq
747 aa
AA seq
DB search
MAAIDAASSAAPRFAPPDPTLPEPWKGLVDGKTGYLYFWNPVTNVTQYERPTSVESVPKS
SSVPINSQIQVQQSSDGHNGHNPDKENDRHGRGSNDVSKLEPVSRYNQNAGGGPVHSHNT
PNGTYGSVIGGFARGNGLMAGGSNLSGDAYRHQHEITVTGDEVPLPLSSFEATGFPSEIL
REVYNAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLIPGFMHLKRCGKDPRMG
PTVLVLSPTRELATQIQDEALKFGKSSRISCTCLYGGAPKGPQLRDIERGVDIVVATPGR
LNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRRIVKEVPTCRQTLMYTATWPKEVR
KIAADLLVNPVQVNIGSIDELVANKSITQYVEVLSPMEKHRRLELILRSQEPGSKIIVFC
STKKMCDQLARNLSRHFGAAAIHGDKSQADRDYVLNQFRTGRSPVLVATDVAARGLDIKD
IKVVINYDFPTGVEDYVHRIGRTGRAGATGLAYTFFTDQDSKHASDLIKVLEGANQGVPA
ELRDMASRGGGMGRPRRWAPSSGGFNGGRGGRTDLGFGGRDGGRGVHGISTSSSSWHDRS
GGRGYDHESRDRYTRGFHDSYDKGHSHSRSPAGWGDRQKNIGLDRSRSRSADRYGNGHGR
SPPRSFHEVMVKRDISSPLQHRVPPKNNENSWEPRHFMDPQKPSRERDNSGRSYGDSQHK
QARSGFTNGPRIGSGDAEEGTIPPNDH
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atggctgctatagatgctgcctcttctgctgctccaagatttgctccaccagaccccact
cttcccgaaccatggaaaggtttggttgatggtaaaactggttatctctacttttggaat
ccagtaaccaatgttacccaatatgaaaggcctacaagcgtagaatctgttccaaagtct
tcttctgtgcctataaattctcaaattcaagttcagcaatcttctgacggacataatgga
cataatcctgacaaggaaaatgatcgacatggaagaggcagcaacgatgtatcaaaactt
gagccagtatcacgttataatcagaatgcaggtggtggacctgttcattcccataataca
cctaatgggacttatggctctgtgattggaggatttgctaggggaaatggattgatggct
gggggaagtaatttgtctggtgatgcttatcgccatcagcatgagataactgtaactgga
gatgaagtgcccctgcccttgtcttcatttgaagcaactggctttccttctgagatactt
agagaggtatacaatgctgggttttctgctccgacaccaattcaggctcagtcgtggcca
attgcgttgcaaggtagagacatagtggccattgctaaaacaggttccgggaaaactttg
ggttacctaattcctggatttatgcatctcaagcggtgcggtaaagatcctcgaatgggt
cctaccgtgttagtgttgtcacctacaagggagttggctactcaaatacaagatgaagct
ctcaagtttgggaagtcctcaagaattagttgcacgtgtttgtatggaggagcaccgaag
ggtcctcaattgagagatattgagagaggagtagatattgtcgttgccactcctggccgg
ttaaatgatattctagagatgaggagaatcagccttcatcaagtttcttatcttgtgtta
gatgaggctgatcgcatgttggacatgggttttgaacctcaaattcggaggattgtgaaa
gaggtccctacttgcaggcagactctgatgtacacagcaacatggccaaaggaagtccga
aaaattgcagcagatctactggtaaaccctgttcaggtcaacattggcagtatcgatgaa
cttgtggcaaacaagtctattacgcagtatgttgaagtattatcgccgatggagaaacac
agaagattggagctgatactgcgttcccaagaaccaggatcgaaaattattgttttttgt
tcaactaagaagatgtgtgatcaactggctcgcaacctcagtcgacattttggagctgct
gctatacatggagacaaatctcaggctgacagggattatgtgctgaatcagtttcgaacc
gggaggtcaccagttcttgtcgctactgatgttgctgctcggggattggatattaaagat
atcaaggtggtaatcaactatgacttccctactggagttgaagattatgttcataggatt
ggaaggaccggaagggcaggtgcaactggattggcatatacgttctttactgatcaggat
tcgaagcatgcatcagatctcatcaaagttttagaaggagcaaaccagggggtgcctgcg
gaacttcgtgatatggcttcacgtggtggaggaatgggaaggcctaggcgttgggctccc
agctctggtggctttaatgggggacgtggtggacgtactgatttggggtttggtggcagg
gacggtggaaggggtgttcatggaatttctacctcatcttctagctggcatgatagaagt
ggaggacgtggttatgatcacgagtctcgtgataggtatactcgtggcttccatgatagt
tacgataagggacatagtcacagtcgaagtcctgctggctggggtgatcgccaaaaaaat
attggccttgaccgcagccggagtcgtagtgctgacaggtatggtaatggtcatggacgt
tccccacctcggagtttccatgaggtgatggtaaaacgtgatatatcatccccactgcaa
catcgtgtgccccctaaaaataatgaaaattcatgggagccgaggcattttatggatcca
cagaaaccttctcgcgagagggacaattctggaagatcgtatggtgattctcagcacaag
caggcaagatcgggatttacgaatgggcctcgaataggttctggtgatgcagaggaaggc
acgatacctcccaatgatcattga
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integrated database retrieval system
