Hibiscus syriacus (Rose-of-Sharon): 120214669
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Entry
120214669 CDS
T09559
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2-like
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03022
Basal transcription factors
hsyr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120214669
09124 Replication and repair
03420 Nucleotide excision repair
120214669
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsyr03021
]
120214669
03400 DNA repair and recombination proteins [BR:
hsyr03400
]
120214669
Transcription machinery [BR:
hsyr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
120214669
DNA repair and recombination proteins [BR:
hsyr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
120214669
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
MetRS-N
Retrotran_gag_2
Motif
Other DBs
NCBI-GeneID:
120214669
NCBI-ProteinID:
XP_039068436
LinkDB
All DBs
Position
Unknown
AA seq
450 aa
AA seq
DB search
MPQVKIIAKNFMDMVASLPAIKLDMLYRNQFICEAILRSLPPLAKKYVLQMLYIDAPITS
KSLQEWVLADGSSKHKVAIDRLIQLRVFEVIDRKKETTYKLNPTFQTSLRKHLIYGGILP
REPMPPNVIARLPTLEELDAYALEQWECFLLQLISSGQTERSSSFSSSMMRIFQRGLLRQ
RDKEAPRLTESGFQFLLMDTNAQLWYVIREYISNSEEQGVDQADLIAFLLELSFHTTGEA
YNLDTLTDGQTTMIKDLADLGLVKLQKGRKDSWFIPTKLATNLSVSLADTTSRKQGFVVV
ETNFRMYSYSSSKLHCEILRLFSRVEYQLPNLIVGSMTKESLYNAFENGITAEQIVTFLQ
QNAHPRVAEKVPSVPENVTDQIRLWESDLKRVEMTPAHFYDEFPSRDVFEAASDFARMHS
GLLWDDAKKMRLVVKGEIHILMREHLRSQN
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaggtgaagattatcgcgaagaatttcatggacatggtggcttcgttacccgcc
attaagctcgacatgctctatcgtaatcaattcatttgcgaagccattctcaggtcgttg
ccaccgttggcgaagaaatacgtgttacaaatgttgtacatcgatgctccgataacatcc
aagtcattgcaggagtgggttcttgctgatggatcatccaagcacaaggttgcaattgat
cggttgattcagttaagagtatttgaagtaatagatcggaagaaggaaacaacttacaag
ttaaatccaacatttcagactagtctccggaagcatttgatatacggtgggattttgcca
agagaaccaatgcctccaaacgttattgcaagacttccaaccttggaggaactcgatgcc
tatgcacttgagcaatgggagtgtttcttgctgcaacttataagttcaggacaaactgaa
agatcatcaagcttcagctcttccatgatgagaatttttcagcgtggtcttttacgtcag
agagacaaagaagcaccaagattgactgagagtggtttccagttcttgttgatggataca
aatgctcagctctggtatgttatcagagaatatatatccaactcagaggagcaaggtgta
gaccaagcagatttaattgcttttctgctagaacttagttttcataccactggtgaggct
tataatttagatacactgacggatggccagacaactatgatcaaggaccttgcagacttg
ggattagtcaaacttcagaagggcaggaaggatagttggtttatacctactaaattagcc
accaatctttcagtgagtttagcagatacaacatcaaggaaacagggatttgttgttgtg
gaaactaactttaggatgtactcatactcatcatctaagttgcactgtgaaattttacgt
ctattctcaagggtagagtatcaacttccaaacctcatagttggttcaatgacaaaagaa
agcttgtataatgctttcgaaaatggcattacagcggagcagatagttacattccttcag
cagaacgcacatcctcgagttgctgagaaagtaccatcagtacctgaaaatgtcacagat
cagataagattgtgggaaagtgatttgaaaagagttgagatgactccagcgcatttttac
gacgaatttccttcaagggatgtctttgaggctgcatctgactttgcccgaatgcattcc
ggtttactatgggacgatgcgaagaaaatgcgtttggttgtaaagggagagattcatata
cttatgcgtgagcatcttcgctctcaaaactag
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