Hibiscus syriacus (Rose-of-Sharon): 120214715
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Entry
120214715 CDS
T09559
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03013
Nucleocytoplasmic transport
hsyr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120214715
03015 mRNA surveillance pathway
120214715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120214715
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120214715
mRNA cycle factors
P-body specific factors
120214715
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
120214715
NCBI-ProteinID:
XP_039068470
LinkDB
All DBs
Position
Unknown
AA seq
514 aa
AA seq
DB search
MKGTLDRTKVVIRHLPPSSTEAMLVEQVGSAFADRYNWFSLRPGNISQKHQLCSRLYIDF
KSPEDVLEFAEFFNGHLFVNEKGAQFKTSVEYAPFQQVPKHCYKNDGREGTIFKDSEYLE
FLEFLAKPVENLPSAEIQLERREVEKVGAPKDASIVTPLMDFVRQKRAAKVGSRRSLANE
KLSRRAGGPSCGGPSSASSKRGSEKRGGSTKMCVVRDSLQNVSGKDKSTYILVSKRDEQQ
LSDKPVTSTVSMVTEVSEEESGASRAIDADKKKGLLLKGKGKEKGISHVAGSMFRQQKFT
SPIKTILGSTPNKQNSQCEDRVIRGIFLNKDSRRSQCSGVRSEQRIQTSNLEERQPPQHS
QVKLGLKDARVALDDKVAGNDLNGTEKTERCSRNKDRTDQGFRTLRCSDGSYASDDSLSS
SASQSARIPLDSSDGAYGDTKVDFSNVRSMQGKTFGNGHNSSLDNGFHKHVSRCIAVTNG
SSAVSNGKPGERGNISGYGSHEKQIWVQKSSSCS
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgaaggggactttggatcgaaccaaagtggttatccgccacttgcctccgtccagtacg
gaggccatgcttgtcgaacaagtcggtagtgcctttgctgaccgttacaactggttttct
ttacgtccaggaaatatcagtcagaagcatcagttgtgttccagactatacatagacttc
aagagccctgaggatgtcttggagtttgctgaattctttaatgggcatttgtttgttaat
gagaaaggggcccagttcaaaactagtgttgagtatgcacctttccaacaagttccaaag
cactgttacaaaaacgatggtcgtgaagggacaatattcaaagattctgagtatttggag
ttccttgaatttcttgcgaagccagttgagaatcttcctagtgcagagatacaattagag
aggagggaggtggaaaaagttggtgcgccaaaggatgcttccatagttacacctttgatg
gattttgttagacagaaaagagctgctaaggttggatcacgaaggtcactggctaatgag
aaacttagcagaagagctggtggaccatcttgtggtggtcctagttcagcatcatcgaaa
agaggttctgaaaagagaggtggttctactaaaatgtgtgttgtaagggatagcttacag
aatgtaagtggtaaagacaaatcaacgtacattctggtttctaaaagggatgagcagcaa
ctttctgataagcctgttacttccacagtatctatggtaactgaagtatctgaagaggaa
agtggagcttccagagctattgatgctgataaaaagaaaggactgcttctgaaagggaaa
gggaaagagaaaggaatttctcatgtggctggaagtatgtttcgtcaacagaaatttaca
tctcctattaaaaccatacttggttcaactcctaacaaacagaactcacaatgtgaagat
agagtgatcagaggcatatttttgaacaaggattctcgtcgaagtcagtgttctggggtc
cggtcagagcaacgtattcagacctcaaatttagaggagagacaacctcctcaacattca
caggtgaagttaggtctgaaggatgctagggttgctttagatgataaggttgctgggaat
gacttgaatggtactgagaagacagaaagatgtagtcgaaacaaagatagaacagatcaa
ggttttaggacccttcgctgttctgatggatcatatgcgagtgatgattccttatcatca
tctgcttctcaatctgcacggattcctttggattcttcagatggggcttatggtgatact
aaagttgatttctccaatgtgcggagcatgcaaggtaaaacttttggaaatggtcataac
agttctttagataatggattccataagcatgtgagtcgttgtatagcagtaactaatgga
tcatctgctgtgagtaatggaaaaccaggggagaggggcaatatttctggctatggttct
catgagaaacaaatctgggtacagaaatcgagttcttgttcttag
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