KEGG   Hibiscus syriacus (Rose-of-Sharon): 120214750
Entry
120214750         CDS       T09559                                 
Name
(RefSeq) exosome complex component RRP41 homolog
  KO
K11600  exosome complex component RRP41
Organism
hsyr  Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hsyr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    120214750
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hsyr03019]
    120214750
Messenger RNA biogenesis [BR:hsyr03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     120214750
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     120214750
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 120214750
NCBI-ProteinID: XP_039068503
LinkDB
Position
Unknown
AA seq 244 aa
MSKTEYVSPEGLRLDGRRPMEMRQLRAEIGTVAKANGSAVFEMGNTKVIAAVYGPREVQN
RSQQLNDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQI
DIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYIEDSAG
GPDVTVGILPKLDKVTLLQMEAKLPVDIFENVMGLAVEGCKAVANYIKEVLLENTKQLEY
RRGL
NT seq 735 nt   +upstreamnt  +downstreamnt
atgtcgaagacagaatacgtgagccccgaaggtctccgattggacggtcgccgtcccatg
gaaatgagacaacttcgtgcagagatcggtaccgtagccaaagctaatggttctgctgtt
tttgagatgggcaacaccaaagtcattgcagcagtgtatggtcctagagaggtgcaaaat
aggagccaacaacttaatgaccaggcactggtgcgctgtgaatacagtatggctaatttt
agtaccggagaccgaatgaggaaaccaaagggtgacaggcggtcaacggagatatcactt
gtcatccgccagaccatggaggcgtgcattttgactcatctaatgcctcgttctcagatc
gatatatttgttcaagttcttcaagccgatggaggaactagatccgcgtgtatcaatgct
gcaactttagctctcgcagatgctgggatcccaatgcgtgatattgtcacttcttgcagt
gctgggtatctaaatagcactcccctgctagatttgaactatattgaagacagtgctgga
ggccccgatgtaaccgtagggatcttgcctaagttggacaaagtgactctacttcagatg
gaggctaagttaccagtggatatcttcgaaaatgtcatgggacttgcggttgaaggctgc
aaggctgtagcaaactacattaaagaagtattactcgagaataccaagcaactggagtat
cgacgaggtctataa

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