Hibiscus syriacus (Rose-of-Sharon): 120214805
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Entry
120214805 CDS
T09559
Name
(RefSeq) coatomer subunit alpha-1-like
KO
K05236
coatomer subunit alpha
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsyr04131
]
120214805
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hsyr04147
]
120214805
Membrane trafficking [BR:
hsyr04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
120214805
Exosome [BR:
hsyr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120214805
Exosomal proteins of bladder cancer cells
120214805
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_SPT8
NBCH_WD40
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
120214805
NCBI-ProteinID:
XP_039068543
LinkDB
All DBs
Position
Unknown
AA seq
1216 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHTKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
MSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFYHEHPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGSLKKKVASPADDILR
LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWE
VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILAAHP
EINLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYDFTTQRETQVVPIRRPG
STSLNQSPRTLSYSPTENAVLICSDVDGGTYELYLIPKDSIGRSDLQEAKKGPGNSAIFV
ARNRFAVLEKSNNQVLIKNLKNEVVKKSGLPVPTDAIFYAGTGNLLCRSDDRVAVFDLQQ
RLVIGDLQTPFVKYVVWSNDMESVALLSKHSIIITNKKLVHQCTFHETIRVKSGAWDENG
VFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGYTIFCLDRDGKNKTLVIDATEYIF
KLSLLRKRYDHVMSMIRNSQLCGEAVIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQ
IAVASAKEIDDKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLINGNLDKLSKM
LKIAEVKNDVMGQFHNALYLGDVQERVKILENAGHLPLAYVTASVHGLHDVAERLAAELG
DDVPSLPEGKKPSLLMPPAPVICGGDWPLLRVMKGIFDGGFDNIGRGAAGDEEDGAEGDW
GEDLDIVDVDGLQNGDVTAILEDGEVGEENEEGGWDLEDLELPPEVQTPKVSSNARSSVF
VAPSPGMPVSQIWTHRSSLAADHAAAGNFDTSMHLLRRQLGIKNFAPLKSMFLDLYTGSH
SYLWASASAPVVSLAVERGWNESASPNVRGPPALVFNFSQLDEKLKAGYKSTTAGKFTDA
LRLFLCILYTIPLVVVESRREVDEVKELIIIAKEYVLGLQMELKRRELKDNLVRQQELAA
YFTHCNLQLPHLRLALLNAMTVCYKAKNLATAANFARRLLETNPTNESHSKTARQVLQAA
ERNMTDASQLNYDFRNPFVPCGATYVPIYRGQKDVSCPYCTTRFVPTQEGQLCTVCDLAI
VGADASGLLCSPSQIR
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgttgacgaagttcgagacgaagagtaatagagtgaagggattaagtttccacactaag
aggccatggatcttagctagtctccacagtggcgttatccagttatgggactatcgaatg
gggactttgattgatcggttcgacgaacatgacggccctgttcgcggtgtccattttcac
atgtctcagcctttgtttgtctctggaggagatgactacaagataaaggtctggaactac
aagttgcatagatgtcttttcacccttcttggacatcttgattatattcgtactgttcaa
ttttatcatgagcatccatggattgtgagtgccagtgatgatcaaactattcgcatatgg
aactggcagtctcgaacttgcatctctgtgttgactggtcataatcattatgttatgtgc
gcctcattccatcctaaagaagaccttgttgtgtctgcctcccttgaccagactgttcga
gtttgggatattggttccttgaaaaagaaggttgcctccccagcagatgatattttacgg
ttgagccagatgaacaccgatctttttggtggtgttgatgctgttgtgaagtatgtgttg
gaaggtcatgaccgaggagtaaattgggccgcttttcatccaaccttacctttgatagtc
tctggtgctgatgaccgccaagtgaaattgtggcgtatgaatgatacgaaggcttgggaa
gtagataccttgagaggacacatgaataacgtgtcatgtgttatgttccatgccaaacag
gacatcattgtgtctaattctgaggataaaagtattcgtgtgtgggatgcaacaaagcga
actggacttcaaactttccgtcgagaacatgacaggttctggattcttgcagctcatcct
gagatcaatcttttggcagctggacatgacagtggcatgattgtatttaagctagagaga
gaacgacctgcttttgcagtaagtggggattctctgttttatgccaaggaccgattttta
aggtattatgactttactactcaaagagagacacaagtagttccaattcgacggcctggt
tctaccagcctgaatcaatctccaagaactctttcttatagtcctacagaaaatgctgtt
cttatctgctcagatgttgatggaggaacttatgagttgtatttgataccaaaagacagc
attggtcggagtgacttacaggaggcaaagaaaggtcctggtaattctgctatatttgtg
gctcggaaccggtttgctgtacttgagaaaagcaacaatcaagtcttaatcaagaatctt
aaaaatgaggttgttaaaaagagtggccttccagtgcctacggacgcaatattttatgct
ggaacaggtaatttgttgtgtagatcagatgatagagtggctgtctttgatctgcaacag
aggcttgttattggtgatctacaaactccttttgtgaagtatgttgtttggtctaatgac
atggagagtgttgctttgctgagcaagcattccattataattactaacaagaagcttgtt
caccagtgcacttttcatgagacaatacgtgttaagagtggggcttgggatgaaaatggt
gttttcatttacaccactctaaatcatataaaatactgccttcccaacggagatagtgga
ataattcgaaccctcgatgttccaatatacataaccaaggtttccggatatacaatcttt
tgcctggatcgtgatggaaagaataagactctggtcattgatgccacagaatacattttc
aagctctctttacttcggaagaggtatgatcatgttatgagcatgataagaaactcccag
ctttgcggtgaggctgtgattgcttatcttcaacagaaggggttccctgaagtggctctc
cattttgtcaaagatgagagaacccggtttaacttggctctggagagtgggaatatccaa
attgctgttgcatcagctaaggagattgatgacaaagatcattggtataggttgggtgtg
gaagcccttcgccaaggcaatgcaggtatagtggaatatgcctaccagaggacaaagaac
tttgagaggttgtcttttctttatctcataaatggtaatctggataagctgtccaagatg
ctgaaaatcgcggaagtcaagaatgatgttatgggccagtttcacaatgctttatatctc
ggtgatgtccaagaacgtgtaaagatcttggagaatgctggtcatctgcctcttgcttat
gttacagcatcagtccatgggctgcatgatgtggccgaaaggttagctgctgagttggga
gatgatgtcccttctttgccagaagggaaaaaaccttccttattaatgcctccagcacca
gttatttgtggtggtgattggcccctgttgagagtaatgaaaggcatatttgatggtgga
tttgataatattggtaggggcgctgcaggtgatgaggaggatggtgcagaaggtgattgg
ggtgaagatcttgatatagtggatgttgatggcttacagaatggagatgttactgcaatt
ttggaagacggggaagtgggtgaagaaaatgaagagggtggatgggacctcgaagacttg
gaactaccccctgaggtacagacaccaaaggtttcttccaatgctcgttcttctgttttc
gtggctccgtcccctggtatgcctgtgagtcaaatttggacacatagatcgtcacttgct
gcagatcatgcagctgctggcaattttgatacatctatgcatttgctgagaaggcaactt
ggaataaaaaactttgctcctttaaaatccatgtttctcgatctctacactggcagccat
agctatctttgggcatctgcatctgctccagtggtgagcttggcggtcgagaggggatgg
aatgagtctgctagtcctaatgtcaggggtccaccagccctagtattcaatttttctcag
ctggatgaaaagttgaaggctggatacaagtccacaacagctggaaaatttaccgatgct
cttcggcttttcctctgcattctttatacaattccattagttgtcgtggagtcaaggagg
gaagttgatgaagtcaaagagttaattatcatcgccaaggagtatgttcttggtctgcag
atggagcttaagcgtagagagttgaaagacaatctggtacgccaacaggagcttgctgcc
tacttcacccactgcaaccttcaattgcctcatctcagacttgctctgctaaacgcaatg
acagtctgctacaaggcaaagaacctggctacggcagctaacttcgccaggcgtcttcta
gaaacaaaccccacaaacgagagccattcaaagacggcaaggcaagtacttcaggctgcc
gagaggaatatgaccgatgcgtcccagttgaactatgatttcaggaacccatttgtccca
tgtggagcaacctatgttcctatttaccgaggacagaaggatgtatcttgcccttactgt
accactcgcttcgtgcctacccaggaaggacagttgtgtacggtctgtgatctcgccatc
gttggagctgatgcttcaggacttctctgttctccatcgcaaatccgatga
DBGET
integrated database retrieval system
