Hibiscus syriacus (Rose-of-Sharon): 120217101
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Entry
120217101 CDS
T09559
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH1-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120217101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120217101
03012 Translation factors [BR:
hsyr03012
]
120217101
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120217101
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120217101
Translation factors [BR:
hsyr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120217101
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
Motif
Other DBs
NCBI-GeneID:
120217101
NCBI-ProteinID:
XP_039070238
LinkDB
All DBs
Position
Unknown
AA seq
849 aa
AA seq
DB search
MEVLDEAEWWDKMNQMKTGQEQEIIFKRNFSRSDQQVLFDMAYELGLYFHAYNKGKALVV
SKVPLPNYRADLDERHGSTQKQIQMSTETERRVGNLLDISKDTRLGDDYGVASSRGAIKP
LPDAKGTDLVATNETDLRRKLSAELKKKQENLNVSNSAKVMRSFKEKLPAFKVKAEFLKA
VAENQVLVVSGETGCGKXTQLPQFILEEEISSLRGADCTLCTQPRRISAISVAARISSER
GESLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVQDPDLNGVSHLLVDEIMKEFSMK
KDNLSALFEDVDIDSEYKSYSATTRHSLEAWSGSQIDLGLVEATIEHICRFEADGAILVF
LTGWDDISKLLDKIKVNNFLGDLSKFLVLPLHGSMPTINQREIFDRPPPIKRKIVLATNI
AESSITIDDVVYVIDCGKAKDTSYDALNKLACLLPSWISKASARQRRGRAGRVQPGVCYR
LYPKLIHDAMLEYQLPEILRTPLQELCLHIKSLQLGTVGSFLEKALQPPDHLSVENAIEL
LKTIGALDDTEELTPLGRHLCTLPLDPNIGKMLLMGAIFQCLNPALTIAAALAHRDPFVL
PINRKEEADAAKRSFADDSCSDHIAVLKAFEGYRDAKRNGRERAFCWENFLSPVTLQMME
DMRNQFIDLLSDIGFVDKSRGASAYNQYSHDLEMVCAILCAGLYPNVVQCKRRGKRTAFY
TKEVGKVDIHPASVNAGVHLFPLPYMVYSEKVKTTSIFVRDSTNISDYALLLFGGNLIPS
KTAEHIEMLGGYLHFSASKSVLDLIRKLRGELDKLLNRKIEEPGFDISVGGKGVVSAVVE
LLHSQNVWY
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atggaagttcttgatgaggctgagtggtgggataagatgaatcaaatgaaaacaggacag
gagcaagagattatctttaaacgaaatttcagccgttccgaccaacaagttctttttgat
atggcctacgaattaggtctttacttccatgcatataataaagggaaggctcttgtggtt
agtaaagttccattgccaaattatcgtgcagatcttgatgaacgtcatggatcaacacag
aaacagatccaaatgtctacagaaactgagaggcgagttggaaatcttttggatatctca
aaggacacaaggttgggtgatgattatggagtcgcatctagtaggggagccataaagcct
ttgcctgatgcaaaaggaactgatttagttgctacaaatgaaactgatttgcgaaggaaa
ctcagtgctgaactcaagaaaaaacaggaaaacttgaatgtaagtaacagtgcgaaggtg
atgcggtctttcaaagaaaaactacctgcattcaaagttaaagctgagtttctaaaagct
gttgctgaaaatcaggttttagtggtttcaggagaaacaggctgtggtaaanacacacag
cttcctcagtttattttagaagaggagatatcatctctgaggggtgctgattgtacatta
tgtactcagccacgtcgtatatctgccatatctgttgcagctagaatatcctcagaaagg
ggagagagtcttggtgaaacagttggttatcagattcgcctagagtcaaagcggtcggct
caaacacggctcttgttttgcactactggagtgttacttcgacagttggttcaggaccca
gatttaaatggcgtgagtcatttgttagtggatgaaatcatgaaagagttctctatgaag
aaagataatttaagtgcactatttgaggatgtggacattgattctgaatataagagttac
agtgcaactacaagacattcacttgaagcatggtctggttcacagattgatttgggactg
gtggaggccacaattgaacatatttgccgctttgaagctgatggagctattcttgtattc
ctcacgggctgggatgacatttctaagctccttgacaagattaaagtgaacaactttctt
ggggaccttagcaagtttttggttcttccactacatggttctatgcctaccattaatcaa
cgagagatatttgaccgtcctccgcctattaagcgaaaaattgttttggcgacaaatatt
gctgaaagtagcattaccatagatgatgttgtgtatgttatagactgtggaaaggcaaag
gatacaagttatgacgctcttaacaagctggcttgtcttttaccatcatggatttcaaag
gcttcagcacgtcagagacgaggccgtgctggccgtgtgcaacctggagtttgctatagg
ctgtacccaaaattaattcacgatgcaatgcttgagtatcaattacctgaaattctccga
acaccattgcaagagttatgccttcatatcaaaagcttgcagcttggaactgtgggatca
tttctggaaaaggcacttcagccgccagatcatctttctgttgaaaatgcaattgagctt
cttaaaacaattggagctttggatgatacagaggagcttacacctcttggtcgccatctt
tgcactctacctttggacccaaacataggaaaaatgcttctgatgggagccatttttcaa
tgcctgaatcctgccttgacaattgcagctgctcttgctcatcgtgacccatttgtcctt
cctataaataggaaagaggaagctgacgcagccaaaagatccttcgctgatgattcttgc
agtgaccatatagcagttcttaaagcctttgaaggatatagagatgcaaaacgtaatgga
agagagagagcattttgttgggaaaactttttatcccccgtaaccttgcagatgatggag
gatatgagaaatcagtttattgacctgttatcagacataggatttgtagacaaatcacgg
ggtgctagtgcttacaaccaatacagccatgatttggagatggtatgtgcaatcctttgt
gctgggctttacccaaatgttgtgcaatgcaaaagaagaggaaagcgtacagcattctac
actaaagaagtcgggaaagtcgacattcatcctgcatccgttaacgcaggggttcatctc
ttcccattgccctacatggtttacagtgagaaggtcaaaacaaccagcatatttgtccga
gactcgaccaacatctctgattatgctttgcttctattcggcggtaatcttattcctagc
aaaacagcagagcatattgagatgcttggagggtaccttcatttttctgcttcaaagagt
gtattagacttgatacggaaactgcgaggagaacttgacaagcttttgaacagaaagatt
gaggaacctgggtttgatatttccgttggaggaaagggagtggtgtctgctgtggttgag
ttattgcacagtcaaaatgtatggtactga
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