Hibiscus syriacus (Rose-of-Sharon): 120217215
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Entry
120217215 CDS
T09559
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03020
RNA polymerase
hsyr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120217215
09124 Replication and repair
03420 Nucleotide excision repair
120217215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsyr03021
]
120217215
03400 DNA repair and recombination proteins [BR:
hsyr03400
]
120217215
Enzymes [BR:
hsyr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120217215
Transcription machinery [BR:
hsyr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120217215
DNA repair and recombination proteins [BR:
hsyr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120217215
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
120217215
NCBI-ProteinID:
XP_039070345
LinkDB
All DBs
Position
Unknown
AA seq
1189 aa
AA seq
DB search
MEDDSEYDPQLIDDEEDEEITQEDAWTVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE
SAEIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLT
YSAPLYVDVTKRVIKKGHDGEEITETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG
ECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMADSQNRPPST
MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQ
MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGIGEF
CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
SYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA
AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGVHRNPDMLVTTLRRLRRRVDVN
TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPEEGGWHDLV
AKGFIEYIDTEEEETTMISMTINDLVQARVNPEEAYSETYTHCEIHPSLILGVCASIIPF
PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD
RATTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQASRYSKRDHSIS
LRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTIGMTYTQEDMP
WTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALH
KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE
GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE
CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEPPKDQKKKGA
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgacagcgagtatgatcctcaactaatcgatgacgaagaagacgaggagatc
acgcaggaagatgcgtggacggtcatctctgcttattttgaagaaaaaggtttggtgcgt
caacagctcgactcgttcgatgagtttatccaaaacacgatgcaagaaattgttgacgag
tccgccgaaatcgagatcaggcccgagtcacagcacaatcctggtcaccaatctgacttc
gctgagactatctataagattaactttggtcagatctacctaagtaaacctatgatgact
gagtcggatggtgaaactgcaactttattcccaaaagctgcaaggttgaggaatcttact
tactctgctccattgtatgtggatgtaactaaaagagttataaagaaagggcatgatggt
gaagaaatcactgagactcaagattttaccaaagtgttcattgggaaggtgcctataatg
cttcgttcgagttattgcacactatatcaaaattcagagaaggatctgactgagcttggg
gagtgtccattagatcaaggtgggtatttcattatcaatgggagtgaaaaagttctaatt
gcccaagagaagatgagtacaaatcatgtctatgtcttcaaaaagaggcagccaaacaag
tatgcctatgtggcagaagttcggtccatggcggactcccagaacaggccaccaagtacc
atgtttgtgcggatgctttcacggaccagtgccaaagggggctcttcagggcagtacatt
cgtgctactcttccatatattcgaactgaaattcctatcattattgtattccgggctttg
ggatttgttgctgataaggacatattagagcatatatgttatgacttctctgatacccag
atgatggaactgcttcgaccttccttagaagaagcatttgtgattcaaaaccagcaggtt
gctttagattatattggtaaaagaggagctactgttggtgttaccagagagaagaggatt
aagtatgctaaagagatccttcaaaaggaaatgcttcctcacgttggtattggggagttt
tgcgagacaaagaaagcttattattttgggtatatcattcaccggctgcttctttgtgca
cttggccggagggccgaagatgatagagatcattatggcaacaagaggctggaccttgct
ggtcctttacttggaggcctctttaggatgctttttcggaagttaaccagggatgtgaga
tcttatgtgcagaagtgtgtggataacgggaaggatgtgaacctgcaatttgctatcaaa
gcaaaaactattacaagtggtcttaaatactcactcgctactggaaattgggggcaagca
aatgcagctggtacaagagctggagtgtcgcaggtgttgaaccgtttgacgtatgcctcc
actttgtcgcacttgcgtaggctcaattctcctataggacgtgaaggaaaattggcaaag
ccacgtcagttgcataattcccagtggggaatgatgtgcccagctgaaacaccagaagga
caggcctgtggacttgtaaagaatctcgccttgatggtctacattactgttggatcagct
gcgtaccctattcttgaatttttggaagaatggggtacagagaattttgaggaaatttct
cctgcagttattcctcaagctacaaaaatttttgtcaatggttgttgggttggtgtgcat
cggaatcctgatatgcttgtaacaacgttgagacggttgagaagacgggttgatgtcaac
actgaagttggtgttgttcgagatattcgtttaaaagaacttagaatatatacagactat
ggtcgttgcagtcggccgttgttcattgtcgagaagcaaaggcttctaataaaaaagaaa
gatatccatgcactgcaacaaagggaaagcccagaagaaggtggttggcatgatcttgta
gctaagggatttattgaatatattgacactgaagaagaggagacaacaatgatttccatg
accatcaatgatcttgtccaagcaagagtcaatccagaggaagcttattcggaaacttat
acccattgtgaaatccatccttcgttgattttgggtgtttgtgcttcaattataccattc
cctgatcataatcagtccccacgtaatacctatcaatctgctatgggtaagcaagcaatg
ggtatatatgtcaccaactatcaatttcgaatggatacattggcctatgttctctactat
ccccagaagccactggttactacacgagctatggaacatctccattttcggcagctacct
gctggcataaatgctattgtggcaattgcctgctattctggatacaaccaagaagattct
gttattatgaatcaatcatcaatagaccgagggttcttccgatcacttttcttccgttct
taccgtgatgaggagaaaaaaatggggaccctagtcaaagaagattttggccgaccagat
agggctactactatgggaatgaggcatggctcttatgataaattggatgacgatggtctt
gcacctcctggaacaagagtttcaggtgaggacgtaatcattggaaagaccacacctatt
tcacaggaggaagcacagggtcaagcatcacgctattcaaaacgtgatcacagtataagc
ttacgtcacagtgaaacaggaatagtggaccaagttctactgacaacaaatgctgatggg
ttgcgatttgtgaaagtaagagtaagatccgtacggattccccagattggagacaagttt
agcagtcggcatggtcaaaagggaacgattggcatgacttatacccaggaagacatgcct
tggactgtggaaggcatctcacctgatatcattgtgaatccacatgctattccttcccga
atgacaatcggtcagcttattgagtgtatcatggggaaagttgcagctcacatgggcaag
gaaggggatgctactccgtttactgatgtcactgtggataatatcagcagagcacttcat
aaatgtgggtatcaaatgcgtggttttgagaccatgtataatgggcacacaggcaggcgg
cttactgctatgatattcttggggccaacatattaccaaagactaaagcacatggtcgac
gataagattcattcgcgtggtcggggtcctgtccagattctaacaaggcagcctgcagaa
ggacgatcgcgtgacggtggtcttcgtttcggagagatggaaagagattgcatgattgca
catggtgctgcccatttcctcaaggagagattgtttgaccaaagtgatgcatacagagtc
cacgtttgtgagcggtgtgggttgatcgccatcgccaatctaaagaaaaattcgttcgag
tgcagaggatgcaagaataaaaccgatattgttcaggtgcacattccttatgcctgtaaa
ctgcttttccaagagctaatggcaatggcaattgctccgagaatgcttacaaaggaacca
cctaaagaccaaaagaagaagggagcgtga
DBGET
integrated database retrieval system
