Hibiscus syriacus (Rose-of-Sharon): 120217554
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Entry
120217554 CDS
T09559
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120217554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsyr03400
]
120217554
DNA repair and recombination proteins [BR:
hsyr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
120217554
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
120217554
NCBI-ProteinID:
XP_039070572
LinkDB
All DBs
Position
Unknown
AA seq
1261 aa
AA seq
DB search
MRKRHLYYPEHSFDEYPFEVFIGDSWQAVELIRIKKGYMTLHIIDDRYLIEKKPFADFRV
RSRKATLPDCTCFLRPGIDICILSCLEQTESQDEETPEPVLVDAKISSIERKPHDSECSC
QFYINFYVNRAPLGSEKGAVSTGTKVVGIDQIRILQKLEKHPCDDQHYRWNVSEDCSTLK
KTKIFLGKFSSDMSWLLVMSVLKQIAFNVKSVQNKIVYQILAEDDENPSRYNNYLQAVNI
KSENGISVSNVVQFDPLENNGAGAAFTADETKQWSVYDAMNLRRSKRRFVQPERFVGHDG
PPGTETTFYLTAAHRINIRREEEDEQDADMDLPISHLLCMNASPSEELTLSETRDVTSNN
NNTPKEVISDVTTSKKSSGKRRGRPRATNRSNHQNDLAIVPVSSETDALASGNFHVLRRP
TSLSEEIKELSTYYYKMKRCRANKQKKIPAVDYMDGENVWKGRHQPTKVQSKSYLSAQTR
MYDFDEPKTYKQTTLSVGAYNKLINSYMKNIDSTSIKDESHVIDRWNQFKEAKIAETSRK
TEPEQPQVEEEEEMSENEMLWREMELCMASTYFDDDEARVSAESLRKASESCQHEFKLDD
EVGVLCRICGFVSTEIKHVSAPFLERKSWIAADGKTCYEDEPEHKADEEESLNLFCNYSS
VGTPLSDESDNVWALIPELRNKLHFHQKRAFEFLWLNIAGSLIPQLMEPSSKKTGGCVVS
HTPGSGKTFLIIAFLTSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPVPVHLIHGRRS
YRVFKNNSMKFHGVPRPSQDVMHVLDCLDKIQKWHAQPSVLVMGYTSFLTLMREDAKFEY
RKFMAKVLRESPGLLVLDEGHNPRSTKSRLRKVLMKVETDLRILLSGTLFQNNFCEYFNT
LCLARPKFVHEILRQLDSKYKKKKRFDKARYLLENRARKFFLDKIARKIDASVGDERLQG
LNMLRNITNRFIDVYEGGNFDCLPGLQIYTLMMNSTDIQREILVKLHKIMSTYTGYPLEL
ELLITLASIHPSLVRTSNCSAKFFSPEELMQLETMKFDFRKGSKVMFVLNLVYRIIKNEK
VLIFCHNIAPINLLADMFERIFRWRKGREILVLTGDLELFERGRVMDKFEEPSGASRVLI
ASINACAEGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLATGTLEED
KYRRTTWKEWVSSMIFSEAFVEDPSQWQAEKIEDDVLREIVAEDKVKSFHMIMKNEKAST
G
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaaaggcatttatattacccggagcattcgttcgatgaatatcctttcgaggtc
ttcatcggagactcatggcaagctgtggaactcatacgaattaagaagggatacatgact
ctacatattatagatgatcgatatttgatcgagaagaaaccgttcgctgattttcgtgtt
aggtctcgtaaggcaactttgcccgattgcacttgcttcttgaggcctggtattgatata
tgcatcctttcctgcctagagcagacagagagtcaagatgaagagactccggagcctgtg
ttggttgatgctaaaataagttccatcgagaggaagcctcacgattccgaatgctcatgc
cagttctacataaacttctatgttaaccgtgctcctctcggttccgagaaaggggctgtt
agcacagggactaaagtggtaggaattgatcagattcgtatcctacaaaagctcgaaaaa
catccttgtgatgatcagcactatagatggaatgtctcggaggactgctcgacactgaaa
aaaactaagatatttttggggaaattctcatccgacatgtcgtggctgcttgttatgtct
gttttgaagcagattgcattcaatgtcaagtccgtgcagaacaagattgtctatcaaatt
ctagctgaagatgatgagaatccctcgagatataataattatcttcaggcagtaaatatc
aaatcagagaatggtatttctgtttccaatgtggtccaattcgaccccctcgaaaataat
ggagccggtgcagcttttactgccgatgagaccaaacaatggtcggtttatgatgctatg
aacttgcgacgctctaaacgcaggtttgtccaaccggagcgtttcgttggtcatgatggt
cctccagggacagagactacattttatctaacagctgcacatagaataaacatccgcaga
gaagaggaagatgagcaagatgcagatatggatttgccgatatcacacttgttatgcatg
aatgcgagtccttcggaagaacttaccctgtctgaaacacgagacgtcacatcgaacaat
aataatacaccaaaggaggtaatatcagatgtgactacttctaagaaatcaagtggaaaa
cgtcgagggagacctcgtgcaaccaatcggagtaaccatcagaatgatcttgctatagtt
cctgtgtcttccgaaaccgatgctctagcctctggaaactttcatgtcctgagacgccca
acaagtttatcggaagagatcaaggaactctctacgtattattataaaatgaaacgctgc
cgtgcgaacaagcagaagaaaattcctgctgtagactatatggatggtgaaaatgtgtgg
aagggaagacatcaaccaactaaagtacagagtaaaagttatctatctgctcaaacacga
atgtatgatttcgatgaaccgaaaacttacaaacagacaactctaagtgttggtgcatac
aataaacttataaattcatatatgaagaatattgattctacttccataaaagatgagtcg
cacgttattgaccggtggaatcagtttaaggaagcaaaaatcgcagaaacgagtagaaaa
acagaaccagaacaaccacaggttgaagaggaggaagaaatgtcggaaaacgaaatgttg
tggagagaaatggaactatgtatggcatcaacttactttgacgatgatgaggctagagta
tcagccgagtctcttcggaaagctagtgaaagttgtcagcatgaattcaagttggacgac
gaagtcggggttctatgtcgtatctgtggctttgttagcactgaaataaaacatgtttct
gcaccatttcttgaacgtaaaagctggatagcagcagacggtaaaacgtgctacgaagat
gagccggagcataaagcagatgaagaagagagcttgaatcttttctgcaattactcgtct
gtaggaacaccattatccgacgaaagtgataatgtatgggcgctgatccccgaacttaga
aataagttacactttcaccagaaaagggcctttgaattcctatggctaaatatcgcaggt
tctttgatacctcaacttatggaaccatcctcgaagaaaacgggcggctgtgtagtttct
catacaccgggatccggtaagacttttctcattatcgcattccttaccagctacttgaaa
ttattcccgggaaagaggcctttggtacttgctccgaagacaactctatatacttggtat
aaggaattcatcaagtgggaaatccctgtaccggttcatttaattcatggccgtagaagt
tatcgagtcttcaagaataactcgatgaagtttcacggagtaccgagacctagtcaagat
gttatgcatgttttggattgtctcgacaaaatacagaagtggcatgctcaaccgagtgtt
cttgtcatgggctacacttcgttcttgacgttaatgcgagaagatgcaaagttcgagtac
cgaaaattcatggctaaggtgctgcgtgaaagtccggggctcctggtattggatgagggg
cacaacccaagaagtactaaatcgagattgagaaaggttttgatgaaagtcgagacagat
ctgaggatattgctttcgggtacattatttcagaacaacttctgtgaatattttaacacc
ctgtgcctcgcaagaccgaaatttgtgcatgaaattttgaggcaattagattcgaaatac
aagaaaaagaagcggttcgacaaagctcgctatttgttagaaaaccgagcaagaaaattc
ttcctagacaaaattgctaggaagattgatgctagtgtcggagatgagaggctgcaaggt
cttaacatgttgaggaacatcacaaacagattcatcgacgtgtatgaaggcgggaatttc
gactgcctccccggtctacagatttacaccctgatgatgaactcaacggacatacaacgt
gagattttggtaaaactccacaaaataatgtccacatatactggctacccattggaattg
gaacttctgataacactcgcttcgatacatcctagtctggtccggacttcaaactgtagt
gccaaatttttcagtccagaagagttgatgcagcttgagacgatgaagtttgatttcaga
aaaggttccaaggtcatgttcgttttgaaccttgtttatcgaatcattaagaacgaaaag
gttctcatcttctgccacaatatcgcccccattaatttgctcgcggatatgttcgagaga
atcttccggtggcggaagggtagagaaatattagtccttacaggagacttggagctattc
gagagaggaagagtgatggacaagttcgaggaaccaagcggtgcttcaagggtactaatc
gcttcgattaacgcatgtgccgaaggcattagtttgacagccgcatcacgggtgatctta
ttggattcggaatggaacccttccaagacaaagcaggctattgcacgggcttttcgccct
ggtcagcaaaaggttgtttatgtgtatcagctattggcaactggaacactcgaagaggac
aagtaccgtcggaccacatggaaagagtgggtatcgagcatgatatttagcgaagcgttc
gtggaagatccgtctcagtggcaagcagaaaagatcgaagacgatgtattgagggagata
gtagcagaggacaaagttaaatcattccatatgatcatgaaaaacgaaaaggcttcgaca
ggttga
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