Hibiscus syriacus (Rose-of-Sharon): 120218489
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Entry
120218489 CDS
T09559
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120218489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsyr03041
]
120218489
03009 Ribosome biogenesis [BR:
hsyr03009
]
120218489
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120218489
Spliceosome [BR:
hsyr03041
]
Complex A
U1 snRNP components
U1 related factors
120218489
Complex B
120218489
Ribosome biogenesis [BR:
hsyr03009
]
Eukaryotic type
Pre-60S particles
Helicases
120218489
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
Motif
Other DBs
NCBI-GeneID:
120218489
NCBI-ProteinID:
XP_039071332
LinkDB
All DBs
Position
Unknown
AA seq
1165 aa
AA seq
DB search
MTSAEAGAATLGPRYAPDDPTLPNPWKGLIDGSTGLMYYWNPETNVTQYERPTVMTPPLK
IGPPPVSTPKLAPIPAAHSAQPNSVAAQMGQIQVPHGGKQQGQQMSQLTQQQGQIIGQQP
GSMVAQVSDQKGSQQPGPQMGQHGQFIAQQNRPQTMQHPNQQVMTQIGQQTMQHQNSQMG
QPQGHQYAHQHLRYMGYQQSVLPHGQQSSQQLAPHGAQHQGQQYPNQEDYKAAVPKKEDV
DFQLGNQTGFSPAQFQQMGTSSQNQSSGTNSVPMPQPGFNLGQAQQFTGSSINMPQPTSM
GHSQQTGTDLVQRQQGHRFQNQMGPSVIQTSMPLPALNTGYEDKLHGRSGNDYYFNSGKD
GPMMGPRQPSLSAIPICFSSQETRASGLPPQNAIPGHGGGFNPIGGHAMHNMYGHTGPPY
PNNSLMRPPFVAPVDTNNMSPAEAYCKQHEVTATGDDVPAPFIRFEDTGFPPEILREIHS
AGFSSPTPIQAQTWPIALQSQDIVAIAKTGSGKTLGYLIPAFMLLRQRRNNPLKGPTVLV
LAPTRELATQIQEEVIKFGRSSIVSCTCLYGGAPKANQLKELDRGADIVVATPGRLNDIL
EMKKIVFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKLVRKIAAD
LLVKPVQVNIGSVDELAANKSITQYVEVVPQMEKERHLGEILQAQERGSKVIIFCSTKRL
CDQLARSLGRNFGAVAFHGDKSQTERDWVLSQFRSGKSPILVATDVAARGLDIKDIRVVI
NFDFPTGIEDYVHRIGRTGRAGATGVSFTFFSEQDWKYAPDLIQVLERANQHVPPEVREI
ASRGGPGFGKDQGGMSRFNSGGRGGRWDNGSRGGMRDGSFGGRGGMRDGGFGGRGGIRDG
GFGGRGGMRDGGFGGPGGRGEPFSGRGNRGRGFGGPAGGQGGWGRNERSLLDQNNSSDGR
GSGRGRGRFDNRRGIADRSGGRSYSRSPYMVRTWRHSRSRSRSRSRSWSRSRSRSRSRSW
SRGRSRSYSRSPGQGRSHSHGRRSRSSSLSYDRYEKPNEQNVEWKDVSKRAFDSPPASYK
QNLDQKDVEKRAFDSPPASHEQNTEQKDITKQAFDSPPVSSMSPGGQGTLGFENSSIEPL
QTFESAELPQGEASAGQVHQSMTEP
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgacgagtgcagaagcgggggcagccactcttggcccacgatatgcacctgatgatcct
actcttccgaatccttggaaggggctgattgatggaagcactggccttatgtattactgg
aatcctgagaccaatgttacccagtatgagaggcctactgttatgactccacccttgaaa
attggccctcctccagtttccacacctaagctagctccaatcccggcagcccactcagca
caacctaatagtgtggcggcacagatgggccaaatacaagttccccatggtggaaaacag
caggggcagcaaatgagtcaattaactcaacagcaaggacagataattgggcagcagccg
ggttcaatggtagcacaggtttctgatcagaagggctcacaacaaccaggtcctcaaatg
ggacagcatgggcagtttattgcacagcagaatagaccacagacaatgcagcatccaaat
cagcaagtgatgactcaaataggacagcagacgatgcaacaccaaaactcacaaatggga
cagccgcaaggacatcaatatgcacatcagcatttgcggtatatgggatatcaacaaagt
gtgcttccacatgggcaacaaagttctcagcagctggctcctcatggtgctcaacaccag
ggtcagcaatatccaaatcaggaagattataaagcagcagttcccaaaaaagaagatgtt
gattttcagctagggaaccaaactggattttctcctgctcaatttcaacagatgggcaca
tcttctcagaatcagtcctctggaactaattcagttccgatgccacagccaggttttaat
ttgggtcaagcgcagcagtttactggctcctccatcaatatgcctcagccaacctctatg
ggtcattcacagcaaactggaacagatttggttcagcggcagcagggtcataggtttcag
aatcagatgggcccatccgtgatacagactagtatgcctcttcctgctttaaatactggt
tatgaagataaactacatggcagatctggaaatgattactacttcaatagtggcaaagat
gggccaatgatgggtccacggcagccctcactttcagctatacccatatgcttttcctct
caggagacgagggcaagtggtctgccacctcaaaatgccatacctggtcatggtggggga
ttcaatcctatcggaggtcatgcaatgcataacatgtatggtcatactggtccaccttat
ccaaataattccttgatgaggcccccatttgttgcacccgtggatactaataatatgtct
ccagccgaagcatactgcaaacaacatgaagtcacggcaacgggagacgatgttccggca
ccattcattaggtttgaagatactggtttccctccagagatactgagagagattcattct
gctgggttttcatcccccaccccaatacaagcacagacatggcccattgcactacaaagt
caggacattgtggcaattgccaaaactggttctggtaaaacattgggctacttgattcct
gctttcatgcttttgaggcagcggcgcaacaaccctctgaagggcccaacagtgttggtt
ttggctccaacccgggagcttgctacacaaatacaagaagaggtcatcaaatttggccga
tcttcaatagtctcttgcacgtgtttgtatggtggagctccaaaggctaatcagttgaaa
gagttagatcgaggagctgatattgttgtggcaactcctggtcggctgaatgacatcctt
gaaatgaaaaaaattgtgtttgggcaggtgtcactccttgttcttgatgaagcagatcga
atgcttgacatgggatttgagccccagatccgcaagattgttaatgagatacctcctcgc
agacaaaccctgatgtacacagcaacgtggcccaaattagttagaaaaatagcagctgac
cttcttgtcaaacctgtacaagtgaacattggcagtgttgatgagcttgctgccaataag
tctatcacccagtatgttgaggttgtcccccagatggagaaagagaggcatctgggggag
attctccaagctcaggaacgtggttcaaaggttattattttttgctccactaagaggttg
tgtgaccagcttgctcgtagtcttggacgcaactttggagctgttgcattccatggggat
aaatctcagactgaaagggactgggtcttgagtcagttccgaagtgggaaatccccaata
ttagttgccactgatgttgctgcccgtgggcttgacatcaaagatataagggtggttatc
aattttgatttccctactggcattgaggattatgttcaccgaattggaagaactggaaga
gctggtgcaactggagtgtctttcacctttttctctgagcaggactggaagtatgcccct
gacttgattcaagttctggagagagcaaaccagcatgtgcctcctgaggtgcgagagata
gcttctcgtggtgggcctggttttgggaaggatcaaggcggaatgagtagatttaattct
ggtggtaggggtgggcgctgggacaatggaagccgtggtggtatgagggatggtagcttt
ggtggacgtggtggaatgagggatggtggctttggtgggcgtggcggtattagggatggt
ggctttggtgggcgtggtggaatgagggatggtggttttggtggccctggaggtagaggt
gaaccattttctggacgtggaaacagaggacgtggatttggtggtcctgctggtggtcaa
ggaggttggggcaggaatgaaagaagcttgcttgatcaaaataatagttctgatgggaga
ggtagtggtcgtggtcggggacggtttgataacagaagaggcattgctgataggagtggt
ggcagaagctatagccgaagtccttacatggttcggacatggcgccatagtcgtagtcgc
agccgcagccgcagtcgtagttggagtaggagtcgaagcagaagtagaagcaggagctgg
tcacgtggtcgtagccgcagctacagccgtagtcctggtcaaggcagaagccatagccat
ggtcgccgcagtcgaagcagtagcctcagttatgacagatatgagaagccaaacgaacag
aacgttgagtggaaggatgtttcaaagcgggcatttgactctcctcctgcctcctacaaa
cagaacttggatcagaaggatgttgaaaagcgagcattcgattctcctcctgcttcccac
gaacagaacactgagcagaaggatattacaaagcaggcattcgattctcctcctgtttcc
agcatgtctcctggcggacaaggcactttagggtttgaaaatagttctatagaaccatta
caaacatttgaaagtgctgagctgcctcaaggagaagcgagtgcaggccaagtgcatcag
tcgatgaccgagccctaa
DBGET
integrated database retrieval system
