Hibiscus syriacus (Rose-of-Sharon): 120218787
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Entry
120218787 CDS
T09559
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 1-like
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120218787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120218787
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
120218787
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
120218787
NCBI-ProteinID:
XP_039071610
LinkDB
All DBs
Position
Unknown
AA seq
223 aa
AA seq
DB search
MGDLHMEADAEAEAESVNGHSSSDDDRKRLDIYPLSCYYFGSKEAIVFKDETLYDRINRM
KSKYAAYGLRTCVEAVILVELFKHPHLLLLQVRNSFFKLPGGRLRPGESDIDGLKRKLSR
KLSATEDGYESEWEVGKCLGMWWRHDFETLMYPYLPPNAKKPKECTKLFLVRLPESRKFI
VPKNMKLLAVPLRQVHESHKTYGPIISGVPQLLSKFSINIVDI
NT seq
672 nt
NT seq
+upstream
nt +downstream
nt
atgggagatcttcacatggaagccgatgccgaagcagaagcagaatcagttaacggtcat
agtagcagcgatgatgatagaaaaaggctggatatttaccctctaagttgttactatttt
ggatccaaagaagccattgttttcaaggatgaaactctgtatgatcgtattaataggatg
aaatccaagtatgcggcttatggattgaggacttgtgtagaagctgttattctggttgag
ttgttcaagcatcctcatctgctgctgctgcaagttagaaattcgttctttaagcttcct
ggtggtcgtttgaggccaggtgaatcagatatcgatggactgaaacggaagctttccagg
aagctttctgccacggaagatggctatgaaagtgaatgggaggtgggaaaatgtcttggc
atgtggtggcggcatgatttcgaaacgttaatgtatccttacttgcctcccaatgcaaaa
aaacccaaggagtgcaccaaactcttccttgtgaggttacccgaaagtcgaaaatttatt
gtacccaaaaacatgaaattgcttgcagttccactgcgccaagttcatgaaagtcacaag
acgtacggaccgataatatcaggagtgccacagttgctatccaaattctccatcaacatt
gttgacatttag
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