KEGG   Herbaspirillum seropedicae Z67: ACP92_00175
Entry
ACP92_00175       CDS       T04519                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
hsz  Herbaspirillum seropedicae Z67
Pathway
hsz02020  Two-component system
Brite
KEGG Orthology (KO) [BR:hsz00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    ACP92_00175
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hsz03021]
    ACP92_00175
Transcription machinery [BR:hsz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     ACP92_00175
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF HTH_23 PhyR_sigma-like HTH_24 HTH_31 GerE At4g18257_C HTH_3 HTH_IclR HTH_Crp_2 Xre-like-HTH DUF2089 DUF977 HTH_Tnp_ISL3 HTH_17 HTH_40 HTH_10
Other DBs
NCBI-ProteinID: AKN63785
LinkDB
Position
complement(47614..48120)
AA seq 168 aa
MPVPMSIEALYCDHHSWLKGWLQRRLGNSEQAADLAQDTFLRLLGSERVPSVIHEPRAYL
TTVAQRLVSNLWRREKLEQAYLEALAQAPVALAPSPQEQAILLETLLELDQLLDELPSIV
RRAFLLSQLDGLTHAQVAAALGISIPTVKRYLVKALQRCYFADISFSA
NT seq 507 nt   +upstreamnt  +downstreamnt
atgccggttcccatgtctatcgaagccctctattgcgaccaccattcctggctcaaggga
tggctgcaacgtcgtctcggcaatagcgagcaggcggcggacctggcccaggacaccttc
ctgcggctgctgggcagcgagcgtgtgcccagcgtgatccacgagccgcgcgcctacctg
accacggtggcgcaacggctggtatcgaacctgtggcgccgcgagaaactggagcaggcc
tacctggaggcgctggcgcaggccccggtggcgctggcgccctcgccgcaggagcaggcc
atcctgctggaaaccctgctggagctggaccagctgctcgacgagctgccttccatcgtg
cgccgcgctttcctgctctcgcagctcgacggcctgacccacgcccaggtcgcagccgcc
ctgggcatttccattccgacggtgaaacgctacctggtcaaggccttgcagcgctgctat
ttcgccgacatctccttcagcgcctga

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