Herbaspirillum seropedicae Z67: ACP92_02465
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Entry
ACP92_02465 CDS
T04519
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hsz
Herbaspirillum seropedicae Z67
Pathway
hsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACP92_02465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsz03019
]
ACP92_02465
03400 DNA repair and recombination proteins [BR:
hsz03400
]
ACP92_02465
Enzymes [BR:
hsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACP92_02465
Messenger RNA biogenesis [BR:
hsz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACP92_02465
DNA repair and recombination proteins [BR:
hsz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ACP92_02465
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AKN64194
LinkDB
All DBs
Position
538027..539883
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AA seq
618 aa
AA seq
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MVDFDSLPADAPPQERALHVLETVFGYSSFRGHQGEIVQHVAGGGDALVLMPTGGGKSLC
YQVPALLRQGTGVVISPLIALMQDQVDALDEVGVRAAFLNSTQSFDEAMQIERRLRQGDL
DLLYVAPERLMTPRCLDLLESARISLFAIDEAHCVSQWGHDFRPEYIKLSVLHERFPQVP
RIALTATADQQTREEIIHRLQLEDARQFVSSFDRPNIRYQIVEKANGRKQLLDFIKSEHP
EDAGIVYCLSRKKVEETADFLRSEGINALAYHAGMDYAQRTANQARFLREDKIVMVATIA
FGMGIDKPDVRFVCHLDLPKSVEGYYQETGRAGRDGLPADAWMAYGLQDVVQQRRMIDES
DADETFKRVLGTKLNAMLALCETLHCRRVHLLDYFGEKSAPCGNCDTCLTPPVSFDATVE
VQKLLSTVYRVEQRFAPGHVIEVLRGIDGERVKQWRHDQLSVFGVGSDRGEAEWRAILRQ
VIALGLLTVDADNYSALKLTEAARPVLRGEQAVQLRRYQKPEKAKRSSQRSSFVETDLST
EEQALFEKLRWWRVETARAHNVPAYVIFHDATMREIAKARPQSLDDLRHVTGVGEKKLET
YGAQIIALIAEMQAAQSS
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggtcgacttcgattccctgcccgccgacgcccctccgcaagaacgcgctctgcacgtg
ctggagacggtgttcggctattcctccttccgtggccaccagggtgagatcgtccagcac
gtcgccggcggcggtgacgccctggtgctcatgcccaccggcggcggcaagtcgctgtgc
taccaggtcccggccctgctgcggcaagggaccggcgtggtgatctcgccgctgatcgcg
ctgatgcaggatcaggtcgacgccctcgatgaagtgggcgtgcgcgccgccttcctcaat
tccacccagagcttcgacgaagccatgcagatcgaacgtcgcctgcgccagggcgacctt
gacctgctctacgtcgcccccgagcgcctgatgacgccgcgctgcctggacctgctggag
tcggcgcgcatttcgctcttcgccatcgacgaagcgcactgcgtctcgcagtggggccac
gatttccgccccgaatacatcaagctgtcggtgctgcacgagcgcttcccgcaggtgccg
cgcatcgccctgaccgccacggccgaccagcagacccgcgaagagatcatccatcgcctg
cagctggaagatgcgcgccagttcgtctcgtccttcgaccgtcccaacatccgctaccag
atcgtcgaaaaggccaatggccgcaagcagctgctggacttcatcaagagcgagcatccc
gaagacgccggcatcgtctattgcctctcccgcaagaaggtcgaggagaccgccgacttc
ctgcgcagtgaaggcatcaatgcgctcgcctatcacgccggcatggactacgcccagcgc
accgccaaccaggcgcgcttcctgcgggaagacaagatcgtgatggtcgccaccatcgcc
ttcggcatgggcatcgacaagcccgacgtgcgtttcgtctgccatctcgacctgcccaag
agcgttgaaggctattaccaggagaccggccgcgccggtcgcgacggcctgcccgccgat
gcctggatggcctatggcctgcaggacgtggtgcaacagcgccgcatgatcgacgaatcc
gacgccgacgagaccttcaagcgcgtcctcggcaccaagctcaacgccatgctggccctg
tgcgaaaccctgcattgccggcgcgtccatctgctggattatttcggcgagaagtccgcc
ccctgcggcaattgcgacacctgcctcaccccgccggtctccttcgatgccaccgtcgaa
gtgcagaagctgctctccaccgtctaccgggtcgaacagcgcttcgcccccggccatgtg
atcgaggttctgcgcggcatcgacggcgagcgcgtcaagcaatggcggcatgaccagctt
tccgtcttcggggtcggcagcgatcgtggcgaagccgaatggcgcgccatcctgcgccag
gtgatcgcgctgggcctgctgacagtggacgccgacaactacagcgccttgaagctcacc
gaagccgcccgcccggtcctgcgcggcgagcaggccgtgcagctgcgtcgctaccagaag
cccgagaaggccaagcgcagttcgcagcgctccagcttcgtcgagaccgatctgtcgacc
gaagagcaggccctgttcgaaaagctgcgctggtggcgcgtggaaaccgcgcgcgcccac
aacgtcccggcctacgtcatcttccacgacgccaccatgcgcgagatcgccaaggcacgc
ccgcagtcgctggacgacctgcgccacgtcaccggcgtgggcgagaagaagctggagacc
tatggcgcccagatcatcgccctgattgccgagatgcaggccgcgcagtcctcgtag
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