Herbaspirillum seropedicae Z67: ACP92_08745
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Entry
ACP92_08745 CDS
T04519
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hsz
Herbaspirillum seropedicae Z67
Pathway
hsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACP92_08745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsz03019
]
ACP92_08745
03016 Transfer RNA biogenesis [BR:
hsz03016
]
ACP92_08745
Enzymes [BR:
hsz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
ACP92_08745
Messenger RNA biogenesis [BR:
hsz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACP92_08745
Transfer RNA biogenesis [BR:
hsz03016
]
Prokaryotic type
tRNA degradation factors
ACP92_08745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
OB_RRP5_4th
S1_RRP5
KH_KhpA-B
DUF5813
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AKN65311
LinkDB
All DBs
Position
1985066..1987204
Genome browser
AA seq
712 aa
AA seq
DB search
MFNKVTKTFQYGQHQVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLT
VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSV
NPEIDPDIPAMIGASAALSLAGIPFNGPVGAARVGYIDGQYVLNPTTSQLKSSQLDLVVA
GTETAVLMVESEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRDGGKPEVQWTAPAKNE
ALIARVSQLAEGPLREAYQTKDKQARTEKLKAVTAQVNEALVAEAAANNGVAADAAEVGS
ILFDLEAKIVRSQILEGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIAT
LGTARDEQKIDGLLGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL
PAADEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIKEGNKF
AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGRHHILG
KMQEAVPAGRAELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV
TIASVDASAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVLPGKDGLLHISQIA
NERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKAAQAEEGGEAAAPQEAQ
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
gtgttcaataaagtaaccaagaccttccagtacggtcagcatcaagtgaccctggaaacc
ggcgaaatcgctcgccaggcttctggcgccgtggtggtgtcggtggaagacaccgtcatc
ctggctaccgtggtggcccgcaaggaagccaagcccggccaggacttcttcccgctgacc
gtcgactacatcgagaagacctatgcagccggccgtatccccggtggtttcttcaagcgt
gaaggcaagccttccgaaaaggaaaccctgacctcgcgcctgatcgatcgtccgatccgc
ccgctgttcccggaaggctacctcaacgaagtgcaggtgatcatccacgtgctgtcggtg
aaccctgagatcgatcctgacatccccgccatgatcggcgcctcggccgccctgtcgctg
gccggcatccccttcaatggcccggtgggcgcagcccgcgtgggttacatcgacggccag
tacgtcctgaacccgaccacttcgcagctcaagtcctcgcaactggacctggtggtggcc
ggtaccgagaccgccgtgctgatggtggaatccgaagccgaccagctgtccgaagaagtc
atgctgggcgccgtcgtgttcggtcacgaccagtccaaggccgtcatcgaagccatccac
gccctggtgcgtgacggcggcaagccggaagtccagtggaccgccccggccaagaacgaa
gccttgatcgcccgcgtctctcaactggccgaaggcccgctgcgcgaagcctaccagacc
aaggacaagcaagcccgtaccgaaaagctcaaggccgtgaccgcccaggtcaacgaagcc
ctggtcgctgaagccgctgccaacaacggcgtggctgcggatgctgccgaagtcggttcc
atcctgttcgacctggaagccaagatcgtgcgttcgcagatcctggaaggcgaaccccgc
atcgacggccgcgacacccgcaccgtgcgtccgatctcgatccgtaccggcgtgctgccg
cgtacccacggttcggccctgttcacccgtggcgaaacgcaagccctggtcatcgcgacc
ctgggtaccgcacgcgacgaacagaagatcgatggtctgctgggtgaatactccgaccgc
ttcatgctccactacaacatgcctccgttcgccaccggcgaaaccggtcgcgtgggcacc
ccgaagcgccgcgaaatcggccacggccgcctggccaagcgcgcgctgatcgccgcgctg
ccggcggctgacgagttcagctactcggtgcgcctggtctcggaaatcaccgagtccaac
ggttcctcctcgatggcgtcggtgtgcggcggctgcctggcattgatggacgccggtgtg
ccgatgaaggcccacgtggccggcatcgccatgggcctgatcaaggaaggcaacaagttc
gccgtgctgaccgacatcctgggcgatgaagatcacctgggcgacatggacttcaaggtg
gccggtactgccaacggcattaccgccctgcagatggacatcaagatccagggcatcacc
aaggaaatcatgcaggtcgcgctggagcaggccaaggaaggccgccaccacatcctgggc
aagatgcaggaagccgtgccggccggccgtgccgagctgtccgacttcgcaccgcgcctg
atcaccatcaagatcaacccggaaaagatccgtgacgtgatcggcaagggcggcgcagtc
attcgcgccctgaccgaagaaaccggcacccagatcgacatcagcgacgaaggcgtggtc
accatcgcctccgtggatgcgtcggctggccaggaagccaagcgccgcatcgaagagctg
accgcttccgtggaagtgggcaagatctacgaaggcaccgtcctgaagctgctggacttc
ggcgccatcgtccaggtcctgccgggcaaggatggcctgctgcacatcagccagatcgcc
aacgagcgcgtcaatgccgtggccgactacctgaaggaaggccagcaagtgcgcgtcaag
gttctggaaaccgatgaccgtggccgcctgaagctgtcgatgaaggctgcccaggctgaa
gaaggcggcgaagctgctgctccgcaagaagcccagtaa
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