Herbaspirillum seropedicae Z67: ACP92_09395
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Entry
ACP92_09395 CDS
T04519
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hsz
Herbaspirillum seropedicae Z67
Pathway
hsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACP92_09395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsz03019
]
ACP92_09395
03009 Ribosome biogenesis [BR:
hsz03009
]
ACP92_09395
Enzymes [BR:
hsz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ACP92_09395
Messenger RNA biogenesis [BR:
hsz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACP92_09395
Ribosome biogenesis [BR:
hsz03009
]
Prokaryotic type
rRNA processing factors
ACP92_09395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AKN65429
LinkDB
All DBs
Position
complement(2137090..2140278)
Genome browser
AA seq
1062 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNY
GEERHGFLPFKEVARSYFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPNGMSVIARTAGIGRNVDELQ
WDLNYLMQLWRAIEGAGQSASGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQ
QFMAHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV
DVNSARATRGSDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGR
LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ
VLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVTVIMIPNKHLETPH
YKMERIKHDDPRLDDAQASYTMAEQADTDIGYSKRQKEDVRPRQEAVVKGITPDQPAPIV
ERKAPEPVAAPVPPPTLAPESGLLGKIFSFFRKKPVAPVAAPAPVEAKAPAKREGERNGR
GGDRNGRNRNRNERGDRAERGERAERNGEQRNGRNPAAAELKAGDAAEGKQVRAPRPPRE
PKEGREPREPRELQAQARDGQEVKETRRNEPREAREPREGREGREPREGREPRAPRAPRG
ERKEAKSEEGLPLEAALAAGTAGVAVAAGTAVIASDEAATQVEAAQVEAGEAGEGAETAE
GATEPRRRRRRGGRNRHRRERDENGNLIDNAEAGDSAEGDAAETAEGAEAAIPAFVPVAD
AAAASAQAAVAQASFAASPVPAAEDAPVAESAAKVESGVNSVEAVAAAAAEATEAVFSHQ
PAIEPVAPSIDASFAPAPVEAAVQAPAQAPAASEAPVEVVPVVAAEPVAAPAPVVQQQIS
LLDAVEAAPVVASAPAAPAAPAAPAPQAAPAPAQAAGNGAQWDSLQQMLSQAGLTLATTD
PVKLRAAQEAAAAFVPAPRVPRERKPLPPQSTEPLVQVETRR
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgttcaacgcaacgcagcaggaagaactgcgcgtagcgatcgttgac
ggtcagaagctgatcgacatcgacatcgaaacgaccggacgcgaacagcgcaagtccaac
atctacaagggcgtcatcacccgcatcgagccctcgctggaagcctgcttcgtcaactac
ggcgaagaacgccacggcttcctgcccttcaaggaagtggcccgttcctacttcaaggaa
ggcatcgacgtccgtaacgccagcatcaaggaagcgctgcgcgaaggccaagaaatcatc
gtccaggtcgagaaggaagaacgcggcaacaagggcgccgccctgacctcgttcatctcc
ctggctggccgctacctggtgctcatgcccaacaacccgcgcggcggcggcgtctcccgc
cgtgtcgaaggcgaagaccgccaggaactgcgcgagaccatggacaagctggacctgccc
aatggcatgtccgtcatcgcccgcaccgccggcatcggccgcaacgtcgatgaactgcag
tgggacctgaactacctgatgcaactgtggcgcgccatcgaaggcgccggccagtccgcc
tcgggcgccttcctgatctaccaggagtcgtcgctggtcatccgcgccatccgcgactac
ttccagcccgacatcggcgaaatcctcatcgacaccgacgacatccacgaccaggcccag
cagttcatggcccacgtgatgccggacatggtccaccgcgtcaagcgctaccgcgacgac
gtgccgctgttctcccgcttccagatcgaacaccagatcgagaccgcctactcgcgtacg
gtcccgctgccttccggcggcgccatcgtgatcgaccacaccgaagcgctggtgtcggtg
gacgtgaactcggcgcgcgccacccgtggcagcgacatcgagaccaccgccttcaacacc
aacctcgaagcggctgatgaagtggcccgccagttgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggagaattccaagaaccagcgcgaagtggaaggccgt
ctcaaggacgccctgcaccacgaccgcgcccgcgttcagatgggcaagatctcgcgcttt
ggcctgatggaactgtcgcgccagcgcctgcgtccgtcgctctccgaaggcagccacgtg
acctgcccgcgctgcaacggcaccggccacatccgcgataccgaatcctccgccctgcag
gtgctgcgcatcatccaggaagaggccatgaaggaaaattcggccgccatccacgtgcag
gcgccggtagacgtggccgccttcctgttgaacgagaagcgtggcgaaatcctgaagatc
gagacgcgccatcgcgtcacggtcatcatgatccccaacaagcacctggaaaccccgcac
tacaagatggaacggatcaagcacgacgatccgcgcctggacgacgcccaagccagctat
accatggccgagcaggccgataccgacatcggctacagcaagcgccagaaggaagacgtg
cgtccgcgccaggaagccgtggtcaagggcatcactccggaccagccggcccccatcgtc
gagcgcaaggcccccgaaccggtggctgcccccgtgccgccgccgacgctggcgccggaa
tcgggcctgctgggcaagatcttcagcttcttccgcaagaagccggtcgcgccggtggct
gcccccgctccggtggaagccaaggctcccgccaagcgcgagggcgagcgcaatggccgt
ggcggcgatcgcaatggccgtaaccgcaaccgcaacgagcgtggcgaccgtgctgaacgt
ggcgagcgcgcagaacgcaacggcgaacagcgcaatggccgcaatccggcggctgccgaa
ctgaaggccggcgacgccgccgaaggcaagcaggtgcgcgcaccgcgtccgccgcgcgaa
cccaaggaaggccgcgagccccgtgaaccgcgcgaactgcaggcccaggcccgtgacggc
caggaagtaaaggaaacccgccgtaacgagcctcgcgaagcccgtgaaccacgtgaaggc
cgcgaaggccgcgagccccgcgaaggccgtgaaccgcgtgcgccccgcgccccacgtggc
gaacgcaaggaagccaagtccgaggaaggcctgccgctggaagccgctctggctgccggc
actgccggtgtagccgtggccgctggcactgccgtcatcgccagcgatgaggccgccacg
caagtcgaggccgcccaggtcgaggctggcgaagctggcgaaggcgctgaaaccgccgaa
ggcgcaaccgaaccgcgtcgccgccgccgtcgcggcggtcgcaaccgtcatcgccgtgaa
cgcgacgagaacggcaacctgatcgacaacgctgaagccggcgacagcgctgaaggcgat
gccgctgaaaccgccgaaggcgctgaagcggccatcccggccttcgtgcccgtggctgac
gccgctgccgcctcggcgcaggctgccgtggcgcaggcctcctttgccgcatcgccggta
ccggccgcagaggatgcccctgttgcagagagcgcagcaaaggtagaaagcggcgtcaac
tcggtggaagccgtggccgctgcagctgccgaagcgaccgaagccgtcttctcgcaccag
cccgccatcgagccggttgccccgtccatcgacgccagcttcgcaccggcgccggtagag
gcagctgtgcaggcgcccgcgcaggctccggcagcttcggaagcgccagtggaagtggtc
ccagtggtggccgccgagcctgttgcagcgcccgctccggtggtgcagcagcagatcagc
ctgctggacgctgtggaagcagcgccggtggttgcctcggcacctgctgcaccagcagca
ccagcagcgcccgcgccgcaagccgcccctgccccggcgcaagccgccggcaatggcgcc
cagtgggactcgctgcagcagatgctgtcgcaggccggcctgaccctggccaccaccgat
ccggtcaagctgcgtgccgcccaggaagccgcagcggccttcgtgccggcgccacgcgtg
ccacgcgagcgcaagccgctgccgccgcagtcgaccgagccgctggtgcaagtggaaacg
cgtcgttga
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