Herbaspirillum seropedicae Z67: ACP92_17835
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Entry
ACP92_17835 CDS
T04519
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hsz
Herbaspirillum seropedicae Z67
Pathway
hsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACP92_17835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsz03019
]
ACP92_17835
Enzymes [BR:
hsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACP92_17835
Messenger RNA biogenesis [BR:
hsz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACP92_17835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
AAA_22
MerR-DNA-bind
P-loop_SecA
Snx8_BAR_dom
Motif
Other DBs
NCBI-ProteinID:
AKN66930
LinkDB
All DBs
Position
complement(4099352..4100815)
Genome browser
AA seq
487 aa
AA seq
DB search
MSDTTSASAAPAAPAVRFEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAA
QTGTGKTAGFSLPIIQRLLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTP
LRSTVVFGGVDMAPQTAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLD
MGFLPDLQRIINLLPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQT
IYKVEEAAKADAVSFIIRQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSE
RMAALEAFKQGQIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASG
DAISLFCDKDDRLLTDIEKLIKKKFERAELTGFAPRARHERSDRAERGERSERGERSDRG
DRSDRGERSRSSREGGAAPMRREKVDPWFLKPYEPSAVETVSTKPELAKNNRPKAKVAAL
LGGMPKR
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacaccacgtccgcgtccgcagcaccggctgcacccgccgtccgctttgaagat
ttcggcctttcgcccgacatcctgaaggccctggccgaacaaggctacgtccacccgacc
ccgatccaggcccaggccattcctgtggtgctgcaaggccgggacgtgatgggcgccgcc
cagaccggtaccggcaagaccgccggcttctcgctgcccatcatccagcgcctgctgcag
cacgccagccatagcgcctcgcccgcccgccatccggtgcgcgccctgatcctgacaccc
acccgcgaactggccgaccaggtcgccgacaacgtggctgcctactgccgcttcaccccg
ctgcgttccacggtggtcttcggcggcgtggacatggccccgcagaccgcgatcctgcgc
gccggcgtagagatcgtcatcgccacgccgggccgcctgctggaccacgtgcagcaaaag
acagtgaacctgtcgcagacccagatcctggtgatggacgaagccgaccgcatgctggac
atgggcttcctgccggacctgcagcgcatcatcaacctcttgcccaagcagcgccagaac
ctgctgttctcggccaccttctcgccggaaatcaagaagctggccgccagcttccagaac
aacccggtcaccatcgaagtggcgcgcagcaatgccacggccgaaaacgtgacccagacc
atctacaaggtcgaggaagcggccaaggccgatgcggtcagcttcatcatccgccagcgc
gaactgaagcaggtgatcgtcttctccaataccaagatcggcgcttcccgcctggcgcgc
accctggtggccgaaggtgtgaaggcctcggccattcacggtgacaagacccagtccgag
cgcatggccgcgctggaagccttcaagcagggccagatcgaagtgctggtggccaccgac
gtggccgcgcgcgggctggacatcgccgagctgccctgtgtgatcaactacgatctgccc
tataacgccgaagactatgtccaccgtatcggccgcaccggccgtgccggcgcatcgggc
gatgcgatctccctgttctgcgacaaggacgaccgcctgctgaccgatatcgagaagctg
atcaagaagaagttcgaacgcgccgagctgaccgggtttgccccgcgcgcgcgtcatgaa
cgcagtgatcgtgccgagcgtggcgaacgaagcgagcggggtgagcgtagcgatcgcggc
gaccgtagtgatcgtggcgagcgcagccgcagcagccgcgaaggaggcgctgcgccgatg
cgccgcgagaaagtcgatccgtggttcctcaagccctacgaaccgagcgccgtcgagacc
gtctccaccaagccggaactggccaagaacaatcgtcccaaggccaaggtggcggcgctg
ctgggcggcatgcccaagcgctga
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