Herbaspirillum seropedicae Z67: ACP92_18090
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Entry
ACP92_18090 CDS
T04519
Symbol
sbcB
Name
(GenBank) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
hsz
Herbaspirillum seropedicae Z67
Pathway
hsz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
ACP92_18090 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsz03400
]
ACP92_18090 (sbcB)
Enzymes [BR:
hsz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
ACP92_18090 (sbcB)
DNA repair and recombination proteins [BR:
hsz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
ACP92_18090 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ACP92_18090 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ACP92_18090 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AKN66977
LinkDB
All DBs
Position
4156995..4158431
Genome browser
AA seq
478 aa
AA seq
DB search
MSNHTFLWHDYETFGAVPRRDRPAQFAAVRTDAELNEIGAPIMIYCKPAPDYLPDPVSCL
ITGITPQHCLAHGLPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA
REWQNGCGRWDLLDVVRLTYALRPQGIQWPKKDDGSISFKLEHLSKANGLVHEAAHDALS
DVRATIALARLIRQNNPRLFDFALALYKKDKAAAEIGLPVPRPFLHASGMFPVAHGCLAL
MWPLGMHPTNKNEVIAWDLRHDPSELATLDAATVRERLFSKRDQLPEGVERLPVKSIHLN
KSPMVVGSLKTLSAERAAELDIDVEAALRHADKAAALPDLTRLWSEVYQRESEGPADVDE
DLYGGFIGNGDRRQLNQLRALSPQALATASVAFDDARLNEILFRYRARSFPETLSPEEAQ
HWEEHRAARLFEGAGGARTIAQLFEQIDQLQEEADDERTQDILGALYDYAEMIAPANQ
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccacaccttcctctggcacgactacgaaacctttggcgccgtgccgcgccgc
gaccgtcccgcccagttcgcggccgtgcgcaccgatgccgaactcaacgagatcggcgcg
cccatcatgatctactgcaagcccgcgccggactacctgcccgacccggtgtcctgcctg
atcaccggtatcacgccccagcactgcctggcacacgggctgcccgagcatgaattcgcg
gcccggatcgaacaggccctgggcgaacccggcaccatcggcgtgggctacaacaccatc
cgcttcgatgacgaagtcacccgcttcatgttctggcgcaacctgatcgatccctacgcc
cgcgaatggcagaacggctgcggccgctgggacctgctggacgtggtgcggctgacctat
gcgctgcgcccgcagggcatacagtggccgaagaaggacgacggcagtatcagcttcaag
ctggaacatctgtccaaggccaatggcctggttcacgaggcggcccacgacgcgctctcc
gacgtgcgcgccaccatcgccctggcgcgcctgatccgccagaacaatccgcgcctgttc
gacttcgccctggccctgtacaagaaggacaaggccgccgccgaaatcggcctgccggtg
ccgcgccccttcctgcacgcctccggcatgttcccggtcgcgcatggctgcctggcgctg
atgtggccgctgggcatgcatcccaccaacaagaacgaagtcatcgcctgggacctgcgc
catgaccccagcgaactggcgaccctggacgcggccaccgtgcgcgaacgcctcttcagc
aagcgcgaccagttgcccgagggcgtggagcgcctgccggtcaagagcatccatctgaac
aagtcccccatggtggtgggcagcctgaagaccctctccgccgagcgcgccgccgaactc
gacatcgatgtcgaggctgccctgcgccacgccgacaaggccgccgccctgcccgacctg
acgaggctgtggagcgaggtctaccagcgcgagagcgaaggcccggcagatgtggatgag
gacctgtacggcggcttcatcggcaacggcgaccgccgccagttgaaccagttgcgcgcc
ctctcgccgcaagccctggccacggccagcgtggccttcgacgacgcccgcctcaatgag
atcctgttccgctatcgcgcccgcagcttccccgagaccttgagccccgaggaagcgcag
cactgggaagagcaccgcgccgcgcgcctgttcgagggcgctggcggagcccgtacgatt
gcgcaactgttcgagcagatcgaccagttgcaggaagaagcggacgacgaacgcacccag
gacattctgggcgcgctctatgactatgcggaaatgatcgcgcccgccaaccagtaa
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