Herbaspirillum seropedicae Z67: ACP92_19525
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Entry
ACP92_19525 CDS
T04519
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
hsz
Herbaspirillum seropedicae Z67
Pathway
hsz03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ACP92_19525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsz03400
]
ACP92_19525
Enzymes [BR:
hsz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
ACP92_19525
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
ACP92_19525
DNA repair and recombination proteins [BR:
hsz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
ACP92_19525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AKN67229
LinkDB
All DBs
Position
complement(4475341..4476162)
Genome browser
AA seq
273 aa
AA seq
DB search
MPELPEVEVTRRGVAPHLEGRTVSGVVMRHSGLRWPFPVGLEALLRGRVIRSTGRRGKYL
LIHFDHGTLIVHLGMSGHLRILPPGIAPQKHDHFDLEVGGQVMRMTDPRRFGAILWHDLA
DGAVEEHLLLRSLGLEPLEEKFTARELFRQTRGRSAPIKQVLLAGDIVVGVGNIYASESL
FKARIHPKTAAGKISLPRYERLAQAIRETLAAAIEQGGSSLRDFIAVNGQSGYFQQNYFV
YNRTGEACRICATPIRQIKQGQRSTFYCVSCQK
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattaccagaagtcgaagttacccgccgcggtgttgcacctcacctggagggg
cgtaccgtcagcggcgtcgtcatgcgccatagcggcctgcgctggccctttccggtcggc
ctggaggccttgctgcgcgggcgcgtcatccgcagcaccggtcggcgcggcaagtacctg
ctgatccatttcgaccatggcacgctcatcgtgcacctgggcatgtcgggccacctgcgc
atcctgccgccgggcatcgccccgcagaagcacgatcacttcgatctcgaagtcggcgga
caggtcatgcgcatgaccgacccgcgccgctttggggccatcctctggcacgacctggcc
gacggcgcggtggaagagcatctgctgctgcgcagcctggggctggagccgctggaagaa
aaattcactgcccgcgagctgttcaggcagacccggggccgcagcgctcccatcaagcaa
gtattgctggccggcgacatcgtggtgggcgtgggcaacatctatgcctcggaaagcctc
ttcaaggcgcgcatccatcccaagacggcggccggcaagatcagcctgccgcgctatgaa
cgcctggcccaagccatccgcgagaccctggccgccgccatcgagcagggcggcagcagc
ttgcgcgacttcattgccgtcaatggccagtcggggtatttccagcagaattacttcgtc
tacaaccgtaccggcgaagcttgccgcatctgcgccaccccgatccgacagatcaagcag
gggcagcgttccactttttattgcgtgagctgccagaaatga
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