Herbaspirillum seropedicae Z67: ACP92_19835
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Entry
ACP92_19835 CDS
T04519
Name
(GenBank) RNA polymerase subunit sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
hsz
Herbaspirillum seropedicae Z67
Pathway
hsz02020
Two-component system
hsz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hsz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ACP92_19835
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACP92_19835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsz03021
]
ACP92_19835
Transcription machinery [BR:
hsz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACP92_19835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
AKN67279
LinkDB
All DBs
Position
4553808..4555298
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AA seq
496 aa
AA seq
DB search
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQILTDNPLLERLDDALDNSVRL
LADGAVSAAPSSGVSETTGSEASSEAAPAAADGESSFEYQDTAPEGVSGDSDWSFDDVAR
SGKSPDDEDARPQLEAHEITLREHLLEQIRVTARTQRDRALLELLTDALDDSGYLEEPLE
DILARLPEELGVDLEELSISLKLLQSLDPAGVGARSAGECLALQIRRLPKVPFVTRRLAL
KIVEDYLPLFAQRDFNKIKKALDCDDEDLREAQAVIRQCRPHPGAEFARDASDYVVPDVI
VKQTKNGWQVMLNHEVMPKLRVNAMYASALKQAKGEGSLSSQLQEAKWLIKNMRQRFDTI
LRVAQAIVERQRNFFSHGAVAMRPLVLREIADTLGLHESTISRVTTQKYMLTPHGMFELK
YFFGSHVATETGGEASSTAIRALIKQLIGAENPQTPLSDSKIADMLAEQGMVVARRTVAK
YREVLKIPPVNLRKSL
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagtcgctccagttacgtacctcgcagcatctcgcattgacgccgcaattgcag
cagtcgatcagactgctgcaactgtcgacgctggaattgcaccaggagctggagcagata
ctgaccgacaatcccctgctggaacgcctcgacgacgcgctcgacaattcggtgcgcctg
ctggccgatggcgccgtctcggcggccccctcgagcggcgtgagcgagaccaccggcagt
gaggccagcagcgaagccgctcccgcagcggccgatggcgaatccagtttcgagtaccag
gacaccgcccccgagggcgtgagcggcgactccgactggagcttcgacgatgtggcccgc
agcggcaagtcgcccgatgacgaagacgcccgcccccagctggaagcgcacgaaatcacc
ctgcgcgaacatctgctggaacagatccgcgtgacggcgcgcacgcagcgcgaccgcgcc
ctgctggaactgctcaccgatgcgctggacgacagcggctatctggaagagccgctggaa
gacatcctcgcgcgcctgcccgaagagttgggcgtggacctggaagaactctccatttcg
ctgaagctgctgcaaagcctggacccggcgggcgtgggtgcgcgcagcgctggcgaatgc
ctggccctgcagatccgccgcctgcccaaggtgcccttcgtcacgcgccggctggcgctg
aagatcgtggaagattacctgccgctgtttgcgcagcgcgacttcaacaagatcaagaag
gcgctcgattgcgatgacgaagacctgcgtgaagcgcaggccgtgatccgccagtgccgt
ccgcaccccggcgcggaattcgcgcgcgatgcctccgactatgtcgtgccggacgtgatt
gtcaaacagacaaagaacggctggcaggtcatgctcaaccatgaggtcatgcccaagctg
cgcgtcaacgccatgtacgccagcgcgctcaagcaggccaagggcgaaggatcgctatcc
tcgcagttgcaggaagccaagtggctcatcaagaacatgcggcaacgtttcgatacaatt
ttgcgcgtcgcgcaggccattgtggaacgtcaaagaaacttcttttcacatggggcagtc
gccatgcgcccccttgtgctacgtgaaattgctgatacactgggtctacacgagagcact
atctctcgcgtgacaactcagaaatacatgctcacaccgcatggcatgtttgagttgaag
tacttcttcggtagccacgtcgcaactgaaaccggaggcgaagcttcctccaccgcgata
cgggcgctgatcaaacagttgataggagccgaaaacccgcagaccccattatccgatagc
aagattgcggatatgctggcagaacaaggcatggtggtcgcgcgacgcacagtcgccaaa
taccgcgaagtgttgaagattccgccagtcaatctccgcaagtccctctga
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