Hymenobacter tibetensis: MTX78_12635
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Entry
MTX78_12635 CDS
T08236
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
htb
Hymenobacter tibetensis
Pathway
htb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
htb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTX78_12635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
htb03019
]
MTX78_12635
Enzymes [BR:
htb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MTX78_12635
Messenger RNA biogenesis [BR:
htb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MTX78_12635
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
AAA_30
P-loop_SecA
UvrD-helicase
Utp25_C
Med26
Motif
Other DBs
NCBI-ProteinID:
UOG72974
LinkDB
All DBs
Position
3149368..3150798
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AA seq
476 aa
AA seq
DB search
MSFDELNLIDPILRALHEEGYTNPTPIQQQAIPQVLEGHDLLGVAQTGTGKTAAFTVPIL
QILHQTAQVERHAPGRIRCLVLTPTRELAIQINESFGAYGRHLAKLRSTVIFGGVSQHAQ
VQTLKRGVEVLIATPGRLLDLMSQGFVDLRNVEVFVLDEADRMLDMGFINDIKRILPKLP
TSRQTLFFSATMPAQIQELANTILKPNPVKVAVTPVSSTADTVTQGVYLVDKNDKADLLE
HVLRDSSIKRVLVFTRTKHGADKVVKTLAKANIPAEAIHGNKSQNHRQRALTNFKAGTTR
VLVATDIAARGIDVDDLTHVINYEVPNEPETYVHRIGRTGRAGAFGTALTFVEDEERAYL
QDIQKLIRRQIDLVADHPYTTRSVAPVLLHGNESIKRPKGPAGRPPRPGREGNAPRAARP
SHEAGAQRGGSDRNRATGNRPAAARPAGERSAGGASSSAGQGRRPYRGGGGNSGRS
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgacgaattaaacctgattgatcctatcctgcgtgctctgcatgaggaaggc
tacacgaaccctaccccaatccagcagcaggctattccgcaggtattggaaggccacgac
ttactaggcgtagctcaaaccggtaccggcaaaaccgctgccttcaccgtcccgattctc
cagattctgcaccagacggcgcaggtagagcgtcacgcgcctggtcgcatccgctgcttg
gtgcttacgcccacccgggagctggctatccaaatcaatgagagctttggggcttatggc
cgtcatctggccaagttgcgctccaccgtcatcttcggtggcgtaagccagcacgcccag
gtccagaccttgaaacgcggagtggaagttcttattgctacccccggccgcttgcttgac
ctcatgagccagggctttgttgatctgcgtaacgtggaagtgttcgtacttgacgaggcc
gaccgcatgctcgacatgggctttatcaacgatatcaagcgcattctacccaagctgccc
acttcccggcagacgctcttcttctcggctactatgccggctcagattcaggagctggcg
aacaccatcctgaagccaaaccccgtgaaggtggccgttacgcccgtttcgagcacggct
gacaccgtgacgcaaggtgtatacttggttgacaaaaacgacaaggccgatttgctggag
catgtgctccgcgattccagcatcaagcgggtattggtgttcacacgcaccaagcatggc
gccgacaaagtggtgaagacgctggccaaagccaacattccggccgaagccatccacggc
aacaagtcgcagaaccaccggcagcgggctcttaccaacttcaaggccggcaccacccgc
gtactggtggccaccgacattgctgctcgtggtatcgacgtcgatgaccttacgcacgtt
atcaactacgaagtgccaaacgagccagaaacctacgtgcatcgcatcggccggactgga
cgcgcgggcgctttcggtacggctcttacgtttgtagaagacgaggagcgcgcttatttg
caagacattcaaaagctgattcgccgccagattgacttggtagccgaccacccctatacc
acgcggtcagtagcgccagttctgttgcacggtaacgaatccatcaagcggcccaaaggt
cctgctggccgtccgccacggccgggccgggaaggaaatgcgccgcgcgccgcccgcccg
agtcatgaggctggggcccaacgtggtggctcagaccgcaaccgtgccactggcaaccgc
cctgctgccgcccgtcctgcgggtgagcggtcagcgggtggcgccagctcaagcgctggc
cagggacgccgtccttaccggggcggtggtggcaacagcggccgttcatag
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