Hymenobacter tibetensis: MTX78_15285
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Entry
MTX78_15285 CDS
T08236
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
htb
Hymenobacter tibetensis
Brite
KEGG Orthology (KO) [BR:
htb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
htb03009
]
MTX78_15285 (rlmD)
Enzymes [BR:
htb01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MTX78_15285 (rlmD)
Ribosome biogenesis [BR:
htb03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MTX78_15285 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_15
TRAM
MTS
Cons_hypoth95
N6_N4_Mtase
PrmA
Motif
Other DBs
NCBI-ProteinID:
UOG77256
LinkDB
All DBs
Position
3834407..3835756
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AA seq
449 aa
AA seq
DB search
MVAEGKCLVRVNNLVIFVTHVAPGDVVDLRISKSRKNYLEAVPTRFHKYSELRVQPFCEH
FGTCGGCKWQHLGYETQLQFKHQQVTDTLQRIGKVALPEIQPILPSPDQTYYRNKLEYTF
SHNGWLTNEQISSGENYERRVLGFHTPARFDKILDVNHCWLQPDPSNQIRLAIRDYAREH
DLPFNNLVTQQGFLRNLIIRTANSGDLMVILQCYYAHDALMPLLDYIHERFPQITSLNYV
LNNKGNETFHDLEVVCYKGEPYIHEEMEGLRFRVGPKSFYQTNSEGAYNLYKVARDFAQL
TGDELVYDLYTGAGTIANFVARQARHVIGVEYVEQAVADAHVNSEINGTTNTEFFAGDMK
DVLSADFIAKHGRPDVVITDPPRAGMHEDVVRRLLEMRAPRIVYVSCNPGTQARDLELLD
EAYKVTRVQPVDMFPHTHHVENVVALELR
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggtagccgagggcaaatgcctggtgcgcgtcaacaaccttgtcattttcgtgacccac
gtagcgcccggcgacgtcgtggatttgcgcatcagcaagtcgcggaagaactacctggaa
gccgtaccaacccgtttccataagtactcggagttgcgcgtgcagccgttttgcgagcat
ttcggcacctgtggaggctgcaagtggcagcatctaggctacgaaacgcagttgcagttc
aagcaccagcaggtgacggacacgctccagcgcatcggcaaagtggcgctgcccgagatt
cagcccatccttccctcgcccgaccagacatactaccgcaacaagctggaatacacgttc
agccacaacggctggcttaccaacgagcaaatcagctccggcgaaaactacgagcggcgc
gtgctgggcttccatacccctgcccgcttcgacaagatcttggacgtcaaccattgctgg
ctccaacccgacccgagcaaccagattcggctggccatccgtgactacgcccgcgagcat
gacctgcccttcaacaacctcgtgacgcagcaaggcttcctgcgcaacctcatcatccgg
acggccaattccggcgacctaatggtgattttgcagtgctattacgcccacgatgccctg
atgccgctgctcgattatatccacgagcggttcccgcaaatcacctccctcaactacgtc
ctcaacaacaaaggcaacgaaactttccacgacctggaggtggtctgctacaaaggcgaa
ccctacattcacgaggagatggaaggtctgcgtttccgcgttggcccgaagtcgttctac
caaaccaattctgaaggcgcgtacaacctctacaaagtagcccgcgacttcgcccagctt
accggcgacgaactggtgtatgacctctataccggcgcgggcaccatcgccaatttcgta
gctcgccaggcccggcacgttatcggggttgaatacgtggagcaagccgtagccgatgcg
cacgtcaactcggaaatcaacggcaccaccaacaccgagtttttcgccggcgacatgaaa
gacgtgctcagcgccgacttcattgccaagcacggccgccctgatgtggtcatcaccgac
ccaccccgcgccggcatgcacgaagatgtagtacgccgcctactggaaatgcgcgccccc
cgcatcgtatacgtcagctgcaaccccggcactcaagcccgcgacctagagctactcgac
gaagcgtacaaagtaacccgcgtgcagccagtggatatgttcccccacactcatcacgtg
gagaatgtggtggcgctggaattgcggtaa
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