Hymenobacter tibetensis: MTX78_21485
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Entry
MTX78_21485 CDS
T08236
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
htb
Hymenobacter tibetensis
Pathway
htb02020
Two-component system
htb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
htb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
MTX78_21485 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MTX78_21485 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
htb03021
]
MTX78_21485 (rpoN)
Transcription machinery [BR:
htb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MTX78_21485 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_12
SF3b1
Thioredoxin_4
Motif
Other DBs
NCBI-ProteinID:
UOG74678
LinkDB
All DBs
Position
5324856..5326427
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AA seq
523 aa
AA seq
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MKQLLSQKLSPQQIQFIKLLQIPTAELEARIKEELEANPALEEGDDADDEVEDQERDDSD
DADDFDDPDAEFDNPDNTLDEDFDNDDRSEEQPEIELPTKDEPLEQTAEASNDDLDLSDY
LNDDEIAGYKMQGDGPGEDEDDREMPLADTGGSLIDSLIDQLGFADLDEKQEAIGRQLIG
SIDNDGYIRRDLSAIANDLAFAQNIEATVSEIEGVLHLIQSFDPAGIAARDLQECLILQL
ERRPQDDVTEHAERILNETFDEFTKKHYQRIQQRLDLEDEELKEAIAVILKLNPKPGGSG
PVGSGKVQYIIPDFILTNDNGVFNLTLNSRNAPDLRVSPAYTEMFRAYDKGAKKDKKLKE
AVTFVKQKLDSAKWFIDAIRQRQNTLLRTMDAIVRYQREFFQEGDESKLRPMILKDIAQE
INMDISTVSRVANSKSVQTEFGIYPLKYFFSEGIATDSGEDASSREVKHILKEIIEGEKK
DRPLSDDKLEKMLNARGYNIARRTVAKYREQLNIPVARLRKEL
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagcttctttcgcagaagctgtcgccccaacagatacaattcattaagctacta
caaatcccgacggcggagctggaagcgcgcatcaaggaggagttggaggcaaatccggcg
ctggaagaaggcgacgatgccgacgacgaggtggaggaccaagagcgcgacgactcggat
gatgccgatgattttgatgacccggatgccgagttcgacaaccccgacaatacgttggac
gaagacttcgacaacgacgaccgcagcgaagagcagcccgagatagagctgcccaccaaa
gacgagccgctggagcaaactgccgaagccagcaacgacgacctcgacctgagcgactac
ctcaacgacgatgaaatagcgggctacaaaatgcagggcgacggccccggcgaagacgaa
gacgaccgggaaatgccactagccgacaccggcggttccctcatcgacagcctaatcgac
cagttgggcttcgccgacctcgacgagaagcaggaagccattggccgccaacttatcggg
tccatcgacaacgacggctatatccgccgtgacttgtcggccattgccaacgacctggcg
tttgcgcagaacattgaagctaccgtatccgagattgaaggggtgctgcacctgattcaa
agtttcgaccccgccggtattgccgcgcgcgacctccaggaatgcctcattttgcagttg
gagcgacgcccacaggacgacgtgaccgagcacgcggagcgcattctgaacgagaccttc
gatgagtttaccaagaagcactaccaacgcatccagcaacggttggacctggaagacgag
gagttgaaggaagccattgcggttattctgaagcttaaccccaagcccggtggcagcggc
ccggttgggtctggcaaggttcagtacatcatccccgactttatcctgaccaatgacaac
ggcgttttcaacctgacgcttaactcccggaacgcccccgatttgcgcgtgtcgccggcg
tacaccgagatgttccgcgcctacgataagggagctaaaaaagacaagaagctgaaggag
gccgtaacctttgtaaagcagaagctggattcggccaagtggtttattgatgccatcagg
cagcgccagaacacgctgctacgcaccatggacgctattgtccgctaccagcgcgagttt
ttccaggaaggcgacgaaagcaagctgcgccccatgattctcaaggacattgcgcaggaa
atcaacatggacatcagcaccgtgagccgggtagccaactcgaaatcggtgcaaacggaa
ttcggtatttacccgctgaagtacttcttctcggaaggcattgccactgattcgggagaa
gatgcctctagccgcgaggtgaagcatatcctgaaagaaatcatcgagggcgaaaagaaa
gaccggccactctccgacgacaagctagagaagatgcttaatgcccgcggctacaacatt
gcccgccgcaccgtagccaagtaccgcgagcagctaaacattccggtggcccggctacgc
aaggaactgtaa
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