Halichoeres trimaculatus (threespot wrasse): 141788033
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Entry
141788033 CDS
T11192
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b
KO
K19719
collagen type II alpha
Organism
htc Halichoeres trimaculatus (threespot wrasse)
Pathway
htc04510
Focal adhesion
htc04512
ECM-receptor interaction
htc04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
htc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
141788033 (col2a1b)
04518 Integrin signaling
141788033 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
141788033 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
htc00536
]
141788033 (col2a1b)
Glycosaminoglycan binding proteins [BR:
htc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
141788033 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
141788033
NCBI-ProteinID:
XP_074522934
LinkDB
All DBs
Position
Unknown
AA seq
1491 aa
AA seq
DB search
MFRFMDSRTLLLLVAAQVCLIALVRCQEEDDQEDVFSCIQDGQRYSDKDVWKPEPCRICV
CDTGTVLCDEIVCEELKDCPKPEIPFGECCPICAADPSPPIGAPGAKGQKGEPGDITDVV
GPRGPAGPMGPPGEQGPRGARGDKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGNPGEAGEPGQA
GPMGPRGPPGPPGKPGDDGEAGKPGKSGERGPSGPQGARGFPGTPGLPGIKGHRGYPGLD
GAKGETGAVGSKGEAGAPGENGAPGPMGPRGLPGERGRPGPSGVAGARGNDGLPGPAGPP
GPVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIP
GSKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPA
GLQGPSGPQGEEGKRGPRGEPGAAGPLGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPA
GASGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGEPGKSGEKGLGGAPGLRGLPGKDGETGPAGPPGPGGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGAAGSQGLQ
GPRGLPGTPGTDGPKGAIGPAGAAGAQGPPGLQGMPGERGGAGIPGPKGDRGDLGEKGPE
GAPGKDGGRGLTGPIGPPGPGGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFA
GPPGADGQPGTKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGAPGEK
GDAGEDGPPGPLGPSGPQGLAGTRGIVGLPGQRGERGFPGLPGPSGEPGKQGAAGGAGDR
GPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGATGIKGDRGNTGPAGAPGAPGAPGAP
GPVGPTGKQGDRGESGAQGPAGSPGPAGARGMPGPQGPRGDKGEAGESGERGQKGHRGFT
GLQGLPGPPGQAGDQGATGPAGPSGQRGPPGPVGPAGKDGSNGLPGPIGPPGPRGRSGET
GPSGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQASGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVFCN
METGESCVLPKPSSIPRKNWWSSKSKDRKHVWFGETMNGGYHFSYGDDSLAPNTAAIQMT
FLRLLSTEASQNLTYHCKNSVAYMDAATGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
GCTKHTGQWGKTTIEYRSQKTSRLPIVDIAPMDIGGADQEFGVEVGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagatttatggattccaggactctactgctacttgtagcagcccaagtgtgtcta
atagccttggtgaggtgtcaggaggaggacgaccaggaggatgtgtttagctgtatacag
gacggacagcgctatagcgacaaggacgtatggaaaccagagccttgtcgcatctgtgtg
tgtgacactggaactgtcctgtgtgacgaaatagtctgcgaggagctaaaagactgcccc
aaacctgaaatcccatttggagagtgttgccccatctgcgctgctgacccatctccaccc
attggagcacctggagccaagggtcagaaaggtgagcccggagacattaccgatgttgta
ggaccaagaggaccagctggcccaatgggcccaccaggagagcaaggaccccgaggagca
agaggagataagggagagaagggaagccctggtccccgcggcagagatggtgagcctggc
acccctggaaaccccggcccccctggacctccaggacctaatggaccccctggccttggc
ggaaactttgctgctcagatggctggaggtttcgatgagaagtctggcggtgcacagatg
ggtgtgatgcaaggaccaatgggccctatgggtcccagaggcccacctggccccactgga
tcacctggcccacaaggtttccagggcaatccaggagaggctggagagcccggacaagct
ggccccatgggtccccgtggccctcctggacctcctggaaaacctggagatgatggtgag
gctggcaaacctggaaaatcaggcgagcgtggaccatctggacctcagggagctcgtgga
ttcccaggaactccaggtctgcccggaatcaagggacacagaggttatcctggtcttgat
ggtgctaagggagagactggagctgtcgggtcaaagggtgaggctggtgctcctggagag
aatggcgcccctggaccgatgggacctcgtggtttgcctggtgagagaggccgtcctgga
cccagtggagttgctggagcacgtggaaatgatggtctgccaggtcctgctggtccccca
ggccctgtcggtccttcaggtgccccaggcttccctggctcccctggctcaaagggagaa
gctggtcctactggtgctcgtggacctgagggtgctcagggaccccgtggagagtctggc
actccaggatctcccggaccctccggtgcttctggtaaccctggtactgatggtatccct
ggatccaaaggatcagctggtgctcctggtatcgctggcgctcctggtttccctggacct
cgtggacctcctgggcctcagggagcaactggacctcttgggcctaaaggaacatccgga
gacccaggtattccagggttcaagggggaggctggacccaaaggagaaattggaccagct
ggtcttcagggaccttctggcccacagggagaggaaggaaagagaggacctcggggagag
cccggtgctgctggaccacttggacctcctggagagaggggatccccaggtaaccgtggt
ttccctggtcaagatggtctagctggtcctaagggagcccccggtgagcgtgggcctgct
ggtgccagtggtcccaagggtgccaatggtgaccccggccgccctggagagcctggtctg
cctggtgctagaggtctgactggacgtccaggtgacgctggtcctcaaggcaaagtggga
ccttctggagctgctggtgaggacggtcgcccaggtcctcctggcccacagggagcacgt
ggacagcctggtgttatgggattccctggacccaagggagcaactggagagcctggaaag
tctggtgagaagggacttggtggagctcctggtctgagaggtctgcctggcaaagatgga
gaaaccggccctgcaggaccccccggcccaggtggtcctgctggagagagaggagagcaa
ggtcagccaggtccttcaggtttccagggtcttcctggacctcctggcccccctggtgag
ggaggcaagcctggtgaccagggtgttcctggagaggctggagctgctggtgctacagga
cctagaggagagcgtggtttccctggggagagaggagctgccggctcccagggtctgcag
ggaccccgtggcctgcctggaactccgggaactgacggaccaaagggagccatcggacct
gctggtgccgccggcgcccagggaccccctggcctgcagggcatgcctggagaaagagga
ggtgctggcattcccggacccaaaggagacagaggtgacttgggagagaaaggacctgaa
ggtgctcctggcaaagatggtggaagaggtctcactggtcccattggtcctcctggtcct
ggtggccccaacggagagaagggagaatctggtcctgctggtccttctggagctcctggt
acccgtggtgcacctggtgacaggggtgagactggtcctcctggtcctgctggatttgct
ggaccccctggtgctgatggtcagcctggaactaagggagagcagggagagtctggacag
aaaggtgatgctggagcccccggacctcaaggaccctctggagcccctggccctgctggc
ccaacaggtgtttctggacctaaaggtgctcgtggtgctcagggacctcctggtgccact
ggtttccctggagctgctggcagagttggacctcctggtcctaatggtaatcctggacct
gctggacccgccggcccacctggtaaagacggacccaagggtgtgagaggagatggtgga
cccccaggcagacagggtgatgcaggtctccgtggtcctgctggggcccctggagagaag
ggagacgctggagaggatggcccacctggtcctcttggtccttcaggtcctcagggtttg
gctggtacacgtggtatcgtcggtctgcctggacagcgtggggagagaggtttccctggt
ctgcctggaccctctggtgagcctggtaagcagggagctgctggtggtgctggagaccgt
ggaccccctggacctgttggaccccctggactcactggacctgcaggagagcccggtaga
gagggtaaccctggatctgatggacctccaggaagagacggtgctactggaatcaagggt
gaccgtggaaacactggtcctgctggtgctcccggcgctccaggcgctcctggtgctcct
ggcccagttggccccaccggcaaacagggagaccgaggagaatctggtgcacaaggacct
gctggatctccaggacctgctggagctagaggaatgccaggaccccaaggaccccgaggt
gacaagggtgaggcaggagagtctggcgagagagggcagaagggacacagaggcttcacc
ggtctgcagggtctgcctggacctccaggtcaagctggagaccagggtgctactggacct
gctggaccttctggacaaagaggaccacctggacctgttgggcctgccggcaaagacgga
tcaaatggtctacctggacctatcggacctcctggaccccgtggtcgcagtggagagact
ggaccctctggtcctcctggaaaccccggaccccctggtcctcctggtccccctggccct
ggcatcgacatgtctgccttcgctggtctgggtcagactgagaagtctcctgatcctctc
aggtacatgagagccgaccaggcatctggaaacctccgtcagcacgacgccgaggtcgac
gccaccctcaagtctctaaacaaccagattgagaacatccgcagccccgagggatccaaa
aagaacccggctcgcacctgcagagacctgaagctctgtcaccctgactggaagagcgga
gagtactggattgaccccaatcagggctgcaccatcgatgcaatcaaagtcttctgcaac
atggagaccggggagtcctgtgtcctccctaagccttccagcatccctcgcaagaactgg
tggtccagcaagagcaaggaccgcaagcacgtctggtttggagagacaatgaatggagga
tatcacttcagctacggtgatgacagcctggcaccaaacactgctgccatccagatgact
ttcctcagactgctgtccaccgaggcctctcagaacctcacctaccactgtaagaacagc
gtagcctacatggacgctgccactggcaacctgaagaaggccgtgctgctgcagggctcc
aacgacgtggagatcagagccgagggcaacagccgcttcacctacagcgtgatggaggac
ggctgcacgaaacacacgggacagtggggcaagacaacgattgaatacagatcgcagaag
acctctcgtctgcccattgtggacattgcccccatggatattggtggagcggaccaggag
ttcggagtcgaagttggcgcagtctgcttcttgtaa
DBGET
integrated database retrieval system
