Halichoeres trimaculatus (threespot wrasse): 141788745
Help
Entry
141788745 CDS
T11192
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
htc Halichoeres trimaculatus (threespot wrasse)
Pathway
htc03013
Nucleocytoplasmic transport
htc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
htc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
141788745
03015 mRNA surveillance pathway
141788745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
htc03019
]
141788745
Enzymes [BR:
htc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
141788745
5.6.2.5 RNA 5'-3' helicase
141788745
Messenger RNA biogenesis [BR:
htc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
141788745
mRNA cycle factors
Common to processing body (P body) and stress granule
141788745
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
NAT10_TcmA_helicase
ATPase
UvrD-helicase
AAA_16
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
141788745
NCBI-ProteinID:
XP_074523893
LinkDB
All DBs
Position
Unknown
AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQING
PDEGLLNGGVDDSVAKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDMAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNTAGRPSNMYFQTHDQIGMIGAGPGHMA
AMNLPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKLGRGGRQRGRGSGSQGPGQGNGP
HIQASQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctctcaaaccctcaccttcctggacaccgaggaa
gcggagttgctcggagcagacacccagggctccgagtacgacttcaccgactttaccctt
ccgagccagacgcaaacccaaggccagacacagagccagttggacagccagattaatggt
cctgatgagggtcttctaaatggaggtgtggacgactctgtcgccaaagccagccagctg
ttggccgagctcaactttgaggaagatgaggaagacacatactacaccaaagacctgcct
gtgcacgcatgcagctactgtgggatccatgatccagcatgtgtcgtgtactgcaacact
agtaagaagtggttctgtaatggacgtggcaacacatctggcagtcacattgtaaaccac
ttggtgagagccaaatgtaaagaggtgacactgcataaagatgggccactgggtgagaca
gtactggagtgttacaattgtggttgtcgcaacgtgttcctcttggggtttatcccagcc
aaggctgattctgtggtggtgctgctctgcaggcagccctgtgctagccaaagcagcctg
aaggatatcaactgggacagctcgcagtggcagcctctgattcaggatcgctgttttttg
tcctggctagtaaagatcccgtcggagcaggagcagctccgggcccgtcagattacggcc
cagcagataaacaagctggaggagctgtggaaggacaaccccagtgccaccttggaagac
ctggagaaaccaggagtggatgaggagccacagcacgtgctgctgcgctatgaggatgcc
taccagtaccaaaacatctttgggcctctggtcaaactggaggctgactatgacaaaaag
ttaaaggagtcacagacacaagacaatataacagtcaggtgggacctgggtctgaataaa
aagcggattgcctatttcacactgcccaagacggattcaggtgatatgaggctgatgcag
ggtgatgaaatctgcttgcggtacaaaggagacatggctcctctgtggaaaggcattggc
catgtcatcaaagttcctgacaactatggggatgaaattgccattgagttacgaagcagt
gttggagcacctgttgaaatcccccacaacttccaggtggactttgtgtggaagtctaca
tcctttgataggatgcagagtgccctgaagacatttgcggtggatgagacctcagtgtct
ggttacatctaccacaaactgctgggccatgaggtagaggatgtcaccatcaagtgccag
ctgccaaagcgcttcactgcccagggtctccctgacctcaatcactcacaggtttatgct
gtgaagacggtgctgcaaaggcctctcagtctgatccagggtcctcctggcactggtaag
actgttacttctgccacaatcgtttaccatctgtccaggcaaggcaacggaccagtcctg
gtgtgtgctcccagcaacattgccgtagatcagctgactgagaaaattgacaagactgga
ttgaaggtcgttaggctgtgtgccaagagcagggaggccattgagtcaccagtgtccttc
ctggctctgcacaaccagatcagcaatatggacagcatgccggaacttcagaaactgcag
cagctgaaggatgagactggtgagctgtcgtctgctgatgagaaacgctacagagctcta
aaacgcacagctgagagggagctgctcatgaatgccgatgttatatgctgtacctgcgtt
ggagctggtgacccacgtctggccaagatgcagttccgctccatcctgattgacgagagc
actcaggccacagagccagagtgcatggtccctgtggtacttggagccaagcagctcatt
ctggtgggtgatcactgccagctgggtcctgtagtgatgtgtaagaaagcagccaaggca
ggtctgtcccagtccctgtttgagcgcctggtggtcctggggatccggccaatccgtctg
caggtccagtaccgcatgcacccggctctcagtgccttcccctccaacatcttctatgaa
ggatctttgcagaatggtgtcactgcagctgaccggatcaagaaaggcttcgacttccag
tggcctcagccagacaagccaatgttcttttatgtcactcagggccaggaggagattgca
agctctggaacctcctacctgaacaggacggaggctgccaacgtggagaagatcaccact
aggctgctgaaggccggggccaaacctgaccaaattggcatcatcaccccatacgagggt
cagcgctcatacctggtccagtacatgcagttcagcggctccctgcacactaagctctat
cagcaagttgaaattgccagcgtggatgccttccagggcagagagaaggacttcatcatc
ctatcatgtgtccgtgccaatgagcatcagggcatcggcttcctgaacgacccacgtcgc
cttaacgtagcgttgaccagagccaagtatggtgtcattattgtggggaaccccaaggcc
ctctccaagcagcctctgtggaacaatcttctcaacaactataaggagcagaaagtcctg
gtggagggacccctcaacaatctgagagagagcctcatgcagttcagcaaaccccgcaag
cttgtcaacaccatcaacccaggaggacgtttcatgagcactgcgatgtacgatgcccgt
gaggccctcattcctggctctgcctatgaccgcagcaatactgcaggccgcccgtccaac
atgtactttcaaactcatgaccagatcgggatgattggggcaggccctggtcacatggct
gctatgaatcttcccatacctttcaacctggtgatgccaccgatgcctcctcccagttac
cttggtcagaccaatggccctgctgcaggccgcggtgctatgaagggtaagctgggccgt
ggtgggcggcagaggggccgcggctcaggtagccagggtcccggtcaaggtaacggacca
cacatccaggccagtcaggatggggcctctcagtccttctcccaggggcccctaacacag
ggctacatctccatgagccagccttcccagatgagccagcctggcctgtcccagccagag
ctgtctcaggacagctacctaggcgatgagttcaagtcccaaatcgacgtggctttgtcc
caggactcgacttatcagggtgaacgtgcataccaacatggtggggtgactggactgtca
cagtattag
DBGET
integrated database retrieval system
