Halichoeres trimaculatus (threespot wrasse): 141793349
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Entry
141793349 CDS
T11192
Name
(RefSeq) CCR4-NOT transcription complex subunit 6
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
htc Halichoeres trimaculatus (threespot wrasse)
Pathway
htc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
htc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141793349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
htc03019
]
141793349
Enzymes [BR:
htc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
141793349
Messenger RNA biogenesis [BR:
htc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
141793349
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
141793349
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_8
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
141793349
NCBI-ProteinID:
XP_074530075
LinkDB
All DBs
Position
Unknown
AA seq
559 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSSEEAANGKKSYWAELEISGRVRSLSTALWSLTHLTALHLSD
NSLSRIPPDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLAQEIMSLYQEPDGTRRLLNYLLDNLAGAIKRIPTEQPPARSWISLQEP
DRTRPSALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIMQEIMGCNADIISLQE
VETEQYYNFFLPELKEQGYDGFFSPKSRARTMSESDRKHVDGCAIFYKTDKFSAVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEVRKEMMEVSSGKSLHGMEKQLALIANA
HMHWDPEYSDVKLVQTMMFLSEVKSIVDKATRSLKLSSVSGETNAIPLVLCADLNSLPDS
GVVEYLSSGGVDCTHKDFKELRYSDCLTKFNCNGKNSTSNGRITHGFKLKSAYENGLMPY
TNYTFDFKGVIDYIFYSKPHLNVLGILGPLDPHWLVENNVSGCPHPHIPSDHFSLFAQLE
LLLPNLPPQVNGLHLPARR
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaaatatgacccgccagatcccaggcggatgtacacaattatgtccagc
gaggaggcagccaacgggaagaagtcatactgggctgagctggaaatcagcggccgagta
aggagtctcagcacagccctgtggtctctcacccacctcactgccctgcacctcagtgac
aactccttgtcacgtatcccgccagacattgccaaactacacaacctggtgtacctggat
ctctcatccaataagatcaggagcctgccggcagagctcggcaacatggtgtctctcagg
gaactgcttttaaataacaaccagttgcgggttctgccatttgaattgggaaaactgttt
cagttacaaacactggggttaaaaggaaacccacttgcacaagaaattatgagcctctac
caggaacctgacggcacgcgaagactgctcaactacttgttagacaatctagcaggggcc
atcaagcgcataccaacagagcagcccccagctaggtcatggatctctcttcaggaacca
gaccggacgcggccctcagcactgttctctgtgatgtgctacaatgtgctctgtgataaa
tatgccacacgacagctatatggctactgcccctcctgggctctaaactgggagtacagg
aagaaatccatcatgcaggagatcatgggctgcaacgcggacataatcagcttgcaggaa
gtggagacagaacagtactacaacttcttcctgcccgagcttaaggagcagggatacgac
gggttcttcagtccaaagtcacgagccaggacaatgtcggagtcagaccgtaaacatgtg
gacgggtgtgcaattttctacaagactgataagttcagcgcagtgcagaagcacacagtg
gagttcaaccagctggccatggctaactccgagggctcagaggctatgctgaacagggtg
atgacaaaggacaacattggggtagcagtgctgcttgaagtccgcaaagagatgatggag
gtctcatctggaaagtccctccatggcatggaaaagcagcttgccctgatagccaatgcc
cacatgcactgggacccggagtactctgatgtcaagctggtgcagaccatgatgttcctg
tcagaggtgaagagcatagtagacaaggccacacgcagcctcaagttgtcctccgtctct
ggtgagaccaatgccattccactggtgctgtgcgctgacctcaactccttgcctgactca
ggcgtcgtggaatacctgagttctggtggagtggactgcacccacaaggacttcaaggag
cttcgttacagcgactgtctgaccaaattcaactgcaatggcaagaacagcacgtccaat
ggcaggatcacccacggcttcaagctgaagagcgcctatgagaatggcctgatgccttac
accaactacacctttgacttcaagggtgtcatcgactacattttctactcgaagcctcac
ctgaacgtgctgggtatcttgggccccctggacccccactggcttgtagagaacaatgtc
agcggctgcccacatcctcacatcccctccgaccacttctccctcttcgcccagctggag
ctgctcctgcccaacctgcctccccaggtcaacgggctccatctgcctgcacgcaggtag
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