Halichoeres trimaculatus (threespot wrasse): 141800501
Help
Entry
141800501 CDS
T11192
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
htc Halichoeres trimaculatus (threespot wrasse)
Pathway
htc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
htc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
141800501 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
htc03021
]
141800501 (smarcc1a)
03036 Chromosome and associated proteins [BR:
htc03036
]
141800501 (smarcc1a)
Transcription machinery [BR:
htc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
141800501 (smarcc1a)
Chromosome and associated proteins [BR:
htc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
141800501 (smarcc1a)
PBAF complex
141800501 (smarcc1a)
GBAF(ncBAF) complex
141800501 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT
BRCT_2
SpeFL
Motif
Other DBs
NCBI-GeneID:
141800501
NCBI-ProteinID:
XP_074539176
LinkDB
All DBs
Position
Unknown
AA seq
1121 aa
AA seq
DB search
MATAATTAGGTGSGGPATGPVGGGGTAVGRKKDGGPSTKFWESSETVSQLETVRQWIGKH
YKKYVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPAKCFLDFKAAGALCHIL
GSVYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPTVFLSPDIEQKQAS
KLKDIIKRHQGSMTDDKSKATHHIYPSPAPQEEEEWLRPVMRKDKQVLVHWGLFPDSYDT
WVSASEVDGDVEDPPSTDRPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKLVNFRQRIFP
KEEESSRTPDRKERKANSAGKKRRRSPSPPSTPAESRKKGGKKGNPGPHWKRRGHRGEEE
DTEEDMTKDLDDSSAGASMEEGSMSKNANSKKDNENTPVKGGNDLDDMEDDSVLSGGKDD
EEQGKAEINRLIDASEDNVTEQTHHIIIPSYGSWFDYNCIHEIERRALPEFFNGKNKSKT
PEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDHES
RPLPMGPPPTPHFTVLADTPSGLMPLNHRPPPIPPPQQMPNFMDKGKDKAIDLQNFGLRS
DLYNKKNIKGKATNSTRDWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL
PIEDPYLESTESSLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSR
VREEVPAELVEAHVKKVQEAARSTGKVDPAFGLESSGIAGTAPEEPEKTETPEAEKMDTD
SDSQQADKAESKDEAEKPSESAEKSSEKTEAPEKVKKEGAEASEREEEGEESGEAKTTAA
DKEKEEAMETSSSDQEKEKDEKVTEEGEEKRKKLEHDIGEGNIATAAAAALASAATKAKH
LAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFH
MEQLKYAEMKARQQMEQQAAAAAAAAAQAQGQGQAPGSGPHQGPPPPGMHPGGPQPHHGG
PVPHHGGPPPGGAMHPGYPPMGHHPMAPHHPGQTGPMGPGQPMAGRMMPGPPSAGPPPGG
MPPMMPPRHPGAPNGMYPGPPPAQPEGVPPVPVGPPAPPSS
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcgacaacggcaggcggaacgggatccggcggaccggctaccggccca
gttggcggcgggggtaccgcagtgggacgaaaaaaggatggcggtccttcaacgaaattc
tgggaaagttcagagacggtatcgcagctcgagacggttcggcagtggatcggaaagcac
tacaagaagtacgtccagaacgactccccctccagtaaatctttggccggtctggtcgtc
cagctgctgcagttccaggaggatgcatttggacgcagagtcaacaatccagctctcacc
aagctacctgccaagtgtttcctggatttcaaggctgcaggggctctctgccacatcctg
gggtcggtctacaagtttaagagcgagcaggggtggcgcaggtttgacctgcagaacccc
tcacgcatggacaggaacgtggaaatgttcctaaatgtggagaagaacttggtccagaac
aactgcctgactcgccccaccgtgttcctgtccccggacatcgagcagaaacaagccagt
aagctcaaagacatcatcaagaggcaccagggctccatgactgatgataagtccaaagct
acacatcacatttacccctcgcccgccccacaggaggaagaggaatggcttcgccccgtc
atgaggaaagacaaacaggtgctggtgcactgggggctctttccagacagttacgacacc
tgggtatcagccagcgaggtggacggggatgtggaggacccacccagcaccgacagaccg
tggaaggtccacgccaagtgggtcttggacaccgatgccttcaatgagtggatgaatgaa
gaggactacgaggtggatgagaacaagaagctggtcaacttccgacagaggattttccct
aaagaggaggagtcttcccgtacacccgatcgaaaggagcgcaaggctaactctgccggc
aagaagaggagacgctcgccctcgccgccaagcactcctgccgagtcccgcaagaaggga
gggaagaaggggaacccaggacctcactggaagcgacggggccacagaggcgaggaggag
gacacggaggaggacatgaccaaggacttggacgactcttcagctggtgccagcatggag
gagggcagcatgtccaaaaacgcaaattcaaagaaagataacgagaacactcctgtgaaa
ggagggaatgacctggacgacatggaggacgactctgtgctgtcgggtggaaaggatgac
gaggagcagggcaaagctgaaatcaaccgactcatcgacgccagcgaggacaacgtgact
gaacagacccatcacatcatcatccccagctacggctcctggttcgactacaactgcatc
catgagatcgagagacgagcacttcctgagttcttcaacgggaaaaacaaatccaaaact
ccagagatatacctggcgtatcgtaacttcatgattgacacgtatcggctaaaccctcag
gagtacctcacctccacctcctgtcgcaggaacttgaccggggacgtttgcgccatcatg
agagtccatgcgttcctggagcagtggggtttggtgaactaccaggtcgaccatgagagt
cgcccactccccatgggccccccacccacacctcatttcactgttctggctgacacacca
tctggcctcatgcccctgaaccacagacccccaccgattcctcctccacagcagatgccc
aacttcatggacaaaggcaaagacaaggccatcgacctgcagaactttggccttcgctcg
gacctctacaacaagaagaacatcaagggaaaagctacaaactccacccgggactggact
gagcaggagactctgctgctgctggaggctctggagatgtacaaagacgactggaacaaa
gtgtccgagcacgtcggttcacgcacccaggacgagtgcatcctccacttcctgcggctg
cccatcgaggacccgtacctggagagcacagagtcctccctgggccctctggcctaccag
cccatccccttcagccagtctggaaaccccgtcatgagcacggtcgccttcctggcctct
gtggtcgaccccagagtggcttctgctgctgcaaaggcggccctggaggagttctctcgt
gtgcgtgaagaggtgcctgctgagctggtggaggcccacgtgaagaaggtgcaggaggcg
gcgaggagcacggggaaggtggaccccgcattcggtctggagagcagcggcatcgccggc
accgcccccgaggagccggaaaagaccgaaactccagaggcagagaagatggacacagac
tcagactcgcagcaggccgacaaggccgagtcgaaggacgaggcagagaagcccagcgag
tctgcagagaagagcagcgagaagacggaggctccagagaaggtgaagaaggagggagcc
gaggcttcagagcgtgaagaggagggcgaggaaagtggagaagccaagacgaccgcagca
gacaaagagaaggaggaagccatggagacgtcgtcctcagatcaggagaaggagaaggac
gagaaggtgacggaggaaggagaggagaagaggaagaagctggagcacgacatcggagag
gggaacattgccacggcggctgctgctgcgctggcgtctgccgccaccaaggctaagcac
ttggcggcagtagaggagaggaaaatcaagtccctggtggctctgctggtggagacccag
atgaagaagctggagatcaagctgaggcacttcgaggagctggagaccatcatggaccgg
gagaaggaggcgttggagctccagcggcagcagctgctcaccgagcgtcaggccttccac
atggagcagctcaagtacgccgagatgaaggccaggcagcagatggagcagcaagccgcc
gctgcagctgcagccgccgcccaggctcaaggacagggacaggctccaggatctggaccc
caccaaggaccccctccaccaggcatgcacccaggagggcctcagcctcaccatggaggc
ccggtgccccatcatggagggccacctccaggcggtgcaatgcaccctggctacccacca
atgggtcaccatccgatggccccacaccacccaggacagacgggtccgatgggacccggc
cagccaatggcaggacgtatgatgcccgggcccccctctgctggccctccccctgggggc
atgcctcccatgatgcccccacgccatcctggagctcccaacggcatgtatcctggccct
ccacctgcacagcctgaaggggtccctccagttcctgtgggtcctccagcgccccctagt
tcatga
DBGET
integrated database retrieval system
